Literature DB >> 18411261

Entropy-driven cAMP-dependent allosteric control of inhibitory interactions in exchange proteins directly activated by cAMP.

Rahul Das1, Mohammad T Mazhab-Jafari, Somenath Chowdhury, Soumita SilDas, Rajeevan Selvaratnam, Giuseppe Melacini.   

Abstract

Exchange proteins directly activated by cAMP (EPACs) are guanine nucleotide-exchange factors for the small GTPases Rap1 and Rap2 and represent a key receptor for the ubiquitous cAMP second messenger in eukaryotes. The cAMP-dependent activation of apoEPAC is typically rationalized in terms of a preexisting equilibrium between inactive and active states. Structural and mutagenesis analyses have shown that one of the critical determinants of the EPAC activation equilibrium is a cluster of salt bridges formed between the catalytic core and helices alpha1 and alpha2 at the N terminus of the cAMP binding domain and commonly referred to as ionic latch (IL). The IL stabilizes the inactive states in a closed topology in which access to the catalytic domain is sterically occluded by the regulatory moiety. However, it is currently not fully understood how the IL is allosterically controlled by cAMP. Chemical shift mapping studies consistently indicate that cAMP does not significantly perturb the structure of the IL spanning sites within the regulatory region, pointing to cAMP-dependent dynamic modulations as a key allosteric carrier of the cAMP-signal to the IL sites. Here, we have therefore investigated the dynamic profiles of the EPAC1 cAMP binding domain in its apo, cAMP-bound, and Rp-cAMPS phosphorothioate antagonist-bound forms using several 15N relaxation experiments. Based on the comparative analysis of dynamics in these three states, we have proposed a model of EPAC activation that incorporates the dynamic features allosterically modulated by cAMP and shows that cAMP binding weakens the IL by increasing its entropic penalty due to dynamic enhancements.

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Year:  2008        PMID: 18411261     DOI: 10.1074/jbc.M802164200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

1.  Dynamically driven ligand selectivity in cyclic nucleotide binding domains.

Authors:  Rahul Das; Somenath Chowdhury; Mohammad T Mazhab-Jafari; Soumita Sildas; Rajeevan Selvaratnam; Giuseppe Melacini
Journal:  J Biol Chem       Date:  2009-04-29       Impact factor: 5.157

2.  Signaling through dynamic linkers as revealed by PKA.

Authors:  Madoka Akimoto; Rajeevan Selvaratnam; E Tyler McNicholl; Geeta Verma; Susan S Taylor; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-14       Impact factor: 11.205

3.  Structure-Activity Relationship Studies of Substituted 2-(Isoxazol-3-yl)-2-oxo-N'-phenyl-acetohydrazonoyl Cyanide Analogues: Identification of Potent Exchange Proteins Directly Activated by cAMP (EPAC) Antagonists.

Authors:  Na Ye; Yingmin Zhu; Haijun Chen; Zhiqing Liu; Fang C Mei; Christopher Wild; Haiying Chen; Xiaodong Cheng; Jia Zhou
Journal:  J Med Chem       Date:  2015-07-16       Impact factor: 7.446

Review 4.  NMR reveals novel mechanisms of protein activity regulation.

Authors:  Charalampos G Kalodimos
Journal:  Protein Sci       Date:  2011-04-08       Impact factor: 6.725

5.  Communication between tandem cAMP binding domains in the regulatory subunit of protein kinase A-Ialpha as revealed by domain-silencing mutations.

Authors:  E Tyler McNicholl; Rahul Das; Soumita SilDas; Susan S Taylor; Giuseppe Melacini
Journal:  J Biol Chem       Date:  2010-03-04       Impact factor: 5.157

6.  Mapping allostery through the covariance analysis of NMR chemical shifts.

Authors:  Rajeevan Selvaratnam; Somenath Chowdhury; Bryan VanSchouwen; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

7.  Cyclic AMP-induced conformational changes in mycobacterial protein acetyltransferases.

Authors:  Subhalaxmi Nambi; Suguna Badireddy; Sandhya S Visweswariah; Ganesh S Anand
Journal:  J Biol Chem       Date:  2012-03-24       Impact factor: 5.157

Review 8.  Allosteric linkers in cAMP signalling.

Authors:  Madoka Akimoto; Kody Moleschi; Stephen Boulton; Bryan VanSchouwen; Rajeevan Selvaratnam; Susan S Taylor; Giuseppe Melacini
Journal:  Biochem Soc Trans       Date:  2014-02       Impact factor: 5.407

Review 9.  EPAC proteins transduce diverse cellular actions of cAMP.

Authors:  Gillian Borland; Brian O Smith; Stephen J Yarwood
Journal:  Br J Pharmacol       Date:  2009-02-06       Impact factor: 8.739

Review 10.  Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms.

Authors:  Chung-Jung Tsai; Antonio Del Sol; Ruth Nussinov
Journal:  Mol Biosyst       Date:  2009-01-06
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