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Literature DB >> 18400915

Genetic differentiation of Escherichia coli O157:H7 clades associated with human disease by real-time PCR.

James T Riordan¹, Sandeep B Viswanath, Shannon D Manning, Thomas S Whittam.

Abstract

The rapid and accurate identification of Escherichia coli O157:H7 strains is central to reducing the impact of outbreaks. A real-time PCR-based approach to differentiating major outbreak lineages of O157 with novel single-nucleotide polymorphisms is described. The utility of this method is in detection of hypervirulent strains in cases of clinical disease.

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Year: 2008 PMID： 18400915 PMCID： PMC2446876 DOI： 10.1128/JCM.00203-08

Source DB: PubMed Journal: J Clin Microbiol ISSN： 0095-1137 Impact factor: 5.948

11 in total

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Journal: J Clin Microbiol Date: 2006-02 Impact factor: 5.948

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Authors: Shannon D Manning; Alifiya S Motiwala; A Cody Springman; Weihong Qi; David W Lacher; Lindsey M Ouellette; Janice M Mladonicky; Patricia Somsel; James T Rudrik; Stephen E Dietrich; Wei Zhang; Bala Swaminathan; David Alland; Thomas S Whittam
Journal: Proc Natl Acad Sci U S A Date: 2008-03-10 Impact factor: 11.205

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Journal: Kansenshogaku Zasshi Date: 1998-03

10. Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California.

Authors: Michael Cooley; Diana Carychao; Leta Crawford-Miksza; Michele T Jay; Carol Myers; Christopher Rose; Christine Keys; Jeff Farrar; Robert E Mandrell
Journal: PLoS One Date: 2007-11-14 Impact factor: 3.240

19 in total

1. Molecular typing of Escherichia coli O157:H7 isolates from Swedish cattle and human cases: population dynamics and virulence.

Authors: R Söderlund; C Jernberg; S Ivarsson; I Hedenström; E Eriksson; E Bongcam-Rudloff; A Aspán
Journal: J Clin Microbiol Date: 2014-08-20 Impact factor: 5.948

2. Phylogenetically related Argentinean and Australian Escherichia coli O157 isolates are distinguished by virulence clades and alternative Shiga toxin 1 and 2 prophages.

Authors: Glen E Mellor; Eby M Sim; Robert S Barlow; Beatriz A D'Astek; Lucia Galli; Isabel Chinen; Marta Rivas; Kari S Gobius
Journal: Appl Environ Microbiol Date: 2012-04-27 Impact factor: 4.792

3. In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence.

Authors: Chad R Laing; Cody Buchanan; Eduardo N Taboada; Yongxiang Zhang; Mohamed A Karmali; James E Thomas; Victor Pj Gannon
Journal: BMC Genomics Date: 2009-06-29 Impact factor: 3.969

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Authors: K Liu; S J Knabel; E G Dudley
Journal: Appl Environ Microbiol Date: 2009-07-24 Impact factor: 4.792

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Authors: Tadasuke Ooka; Jun Terajima; Masahiro Kusumoto; Atsushi Iguchi; Ken Kurokawa; Yoshitoshi Ogura; Md Asadulghani; Keisuke Nakayama; Kazunori Murase; Makoto Ohnishi; Sunao Iyoda; Haruo Watanabe; Tetsuya Hayashi
Journal: J Clin Microbiol Date: 2009-07-29 Impact factor: 5.948

6. Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions.

Authors: Chad Laing; Cody Buchanan; Eduardo N Taboada; Yongxiang Zhang; Andrew Kropinski; Andre Villegas; James E Thomas; Victor P J Gannon
Journal: BMC Bioinformatics Date: 2010-09-15 Impact factor: 3.169

10. Genomic analysis of Shiga toxin-producing Escherichia coli O157:H7 from cattle and pork-production related environments.

Authors: Peipei Zhang; Saida Essendoubi; Julia Keenliside; Tim Reuter; Kim Stanford; Robin King; Patricia Lu; Xianqin Yang
Journal: NPJ Sci Food Date: 2021-07-01