Literature DB >> 18400551

Rate and accuracy of bacterial protein synthesis revisited.

Magnus Johansson1, Martin Lovmar, Måns Ehrenberg.   

Abstract

Our understanding of the accuracy of tRNA selection on the messenger RNA programmed ribosome has recently increased dramatically because of high-resolution crystal structures of the ribosome, cryo-electron microscopy reconstructions of its functional complexes, and fast kinetics experiments. Application of single-molecule spectroscopy with fluorescence resonance energy transfer to studies of tRNA selection by the ribosome has also provided new, albeit controversial, insights. Interestingly, when the fundamental trade-off between rate and accuracy in substrate-selective biosynthetic reactions is taken into account, some aspects of the current models of ribosome function appear strikingly suboptimal in the context of growing bacterial cells.

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Year:  2008        PMID: 18400551     DOI: 10.1016/j.mib.2008.02.015

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  42 in total

1.  Speed, dissipation, and error in kinetic proofreading.

Authors:  Arvind Murugan; David A Huse; Stanislas Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-11       Impact factor: 11.205

2.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

Review 3.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

Review 4.  smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding.

Authors:  Colin D Kinz-Thompson; Ruben L Gonzalez
Journal:  FEBS Lett       Date:  2014-07-24       Impact factor: 4.124

5.  Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Authors:  Joana Pinto Vieira; Julien Racle; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 6.  Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu.

Authors:  Xabier Agirrezabala; Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

7.  The ribosome can discriminate the chirality of amino acids within its peptidyl-transferase center.

Authors:  Michael T Englander; Joshua L Avins; Rachel C Fleisher; Bo Liu; Philip R Effraim; Jiangning Wang; Klaus Schulten; Thomas S Leyh; Ruben L Gonzalez; Virginia W Cornish
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

8.  Capturing transition paths and transition states for conformational rearrangements in the ribosome.

Authors:  Jeffrey K Noel; Jorge Chahine; Vitor B P Leite; Paul Charles Whitford
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

9.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

10.  Effects of macromolecular crowding on protein conformational changes.

Authors:  Hao Dong; Sanbo Qin; Huan-Xiang Zhou
Journal:  PLoS Comput Biol       Date:  2010-07-01       Impact factor: 4.475

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