Literature DB >> 18400175

Multiple states of a nucleotide-bound group 2 chaperonin.

Daniel K Clare1, Scott Stagg, Joel Quispe, George W Farr, Arthur L Horwich, Helen R Saibil.   

Abstract

Chaperonin action is controlled by cycles of nucleotide binding and hydrolysis. Here, we examine the effects of nucleotide binding on an archaeal group 2 chaperonin. In contrast to the ordered apo state of the group 1 chaperonin GroEL, the unliganded form of the homo-16-mer Methanococcus maripaludis group 2 chaperonin is very open and flexible, with intersubunit contacts only in the central double belt of equatorial domains. The intermediate and apical domains are free of contacts and deviate significantly from the overall 8-fold symmetry. Nucleotide binding results in three distinct, ordered 8-fold symmetric conformations--open, partially closed, and fully closed. The partially closed ring encloses a 40% larger volume than does the GroEL-GroES folding chamber, enabling it to encapsulate proteins up to 80 kDa, in contrast to the fully closed form, whose cavities are 20% smaller than those of the GroEL-GroES chamber.

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Year:  2008        PMID: 18400175      PMCID: PMC2719814          DOI: 10.1016/j.str.2008.01.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  40 in total

1.  Nucleotide-dependent protein folding in the type II chaperonin from the mesophilic archaeon Methanococcus maripaludis.

Authors:  Andrew R Kusmierczyk; Jörg Martin
Journal:  Biochem J       Date:  2003-05-01       Impact factor: 3.857

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  FindEM--a fast, efficient program for automatic selection of particles from electron micrographs.

Authors:  A M Roseman
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

Review 4.  Two families of chaperonin: physiology and mechanism.

Authors:  Arthur L Horwich; Wayne A Fenton; Eli Chapman; George W Farr
Journal:  Annu Rev Cell Dev Biol       Date:  2007       Impact factor: 13.827

5.  Allosteric control by ATP of non-folded protein binding to GroEL.

Authors:  O Yifrach; A Horovitz
Journal:  J Mol Biol       Date:  1996-01-26       Impact factor: 5.469

6.  The crystal structure of the bacterial chaperonin GroEL at 2.8 A.

Authors:  K Braig; Z Otwinowski; R Hegde; D C Boisvert; A Joachimiak; A L Horwich; P B Sigler
Journal:  Nature       Date:  1994-10-13       Impact factor: 49.962

7.  Residues in chaperonin GroEL required for polypeptide binding and release.

Authors:  W A Fenton; Y Kashi; K Furtak; A L Horwich
Journal:  Nature       Date:  1994-10-13       Impact factor: 49.962

8.  Nested cooperativity and salt dependence of the ATPase activity of the archaeal chaperonin Mm-cpn.

Authors:  Andrew R Kusmierczyk; Jörg Martin
Journal:  FEBS Lett       Date:  2003-07-17       Impact factor: 4.124

9.  NMR studies on the substrate-binding domains of the thermosome: structural plasticity in the protrusion region.

Authors:  Markus Heller; Michael John; Murray Coles; Gundula Bosch; Wolfgang Baumeister; Horst Kessler
Journal:  J Mol Biol       Date:  2004-02-20       Impact factor: 5.469

10.  Symmetric complexes of GroE chaperonins as part of the functional cycle.

Authors:  M Schmidt; K Rutkat; R Rachel; G Pfeifer; R Jaenicke; P Viitanen; G Lorimer; J Buchner
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

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  22 in total

1.  Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images.

Authors:  Junjie Zhang; Peter Minary; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Daniel Meyer; Kelly M Knee; Daniel R Goulet; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  J Biol Chem       Date:  2010-06-23       Impact factor: 5.157

Review 3.  Chaperone machines for protein folding, unfolding and disaggregation.

Authors:  Helen Saibil
Journal:  Nat Rev Mol Cell Biol       Date:  2013-09-12       Impact factor: 94.444

4.  Weak intra-ring allosteric communications of the archaeal chaperonin thermosome revealed by normal mode analysis.

Authors:  Manori Jayasinghe; Pooja Shrestha; Xiongwu Wu; Riina Tehver; George Stan
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

5.  The group II chaperonin Mm-Cpn binds and refolds human γD crystallin.

Authors:  Kelly M Knee; Daniel R Goulet; Junjie Zhang; Bo Chen; Wah Chiu; Jonathan A King
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

6.  Staggered ATP binding mechanism of eukaryotic chaperonin TRiC (CCT) revealed through high-resolution cryo-EM.

Authors:  Yunxiang Zang; Mingliang Jin; Huping Wang; Zhicheng Cui; Liangliang Kong; Caixuan Liu; Yao Cong
Journal:  Nat Struct Mol Biol       Date:  2016-10-24       Impact factor: 15.369

7.  Mechanism of nucleotide sensing in group II chaperonins.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Ramya Kumar; Tom Lopez; Ryan P McAndrew; Kelly M Knee; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  EMBO J       Date:  2011-12-23       Impact factor: 11.598

8.  Flexible interwoven termini determine the thermal stability of thermosomes.

Authors:  Kai Zhang; Li Wang; Yanxin Liu; Kwok-Yan Chan; Xiaoyun Pang; Klaus Schulten; Zhiyang Dong; Fei Sun
Journal:  Protein Cell       Date:  2013-05-25       Impact factor: 14.870

Review 9.  The structural dynamics of macromolecular processes.

Authors:  Daniel Russel; Keren Lasker; Jeremy Phillips; Dina Schneidman-Duhovny; Javier A Velázquez-Muriel; Andrej Sali
Journal:  Curr Opin Cell Biol       Date:  2009-02-14       Impact factor: 8.382

10.  Mechanism of folding chamber closure in a group II chaperonin.

Authors:  Junjie Zhang; Matthew L Baker; Gunnar F Schröder; Nicholai R Douglas; Stefanie Reissmann; Joanita Jakana; Matthew Dougherty; Caroline J Fu; Michael Levitt; Steven J Ludtke; Judith Frydman; Wah Chiu
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

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