Literature DB >> 18393987

Chemical gene synthesis: strategies, softwares, error corrections, and applications.

Ai-Sheng Xiong1, Ri-He Peng, Jing Zhuang, Feng Gao, Yi Li, Zong-Ming Cheng, Quan-Hong Yao.   

Abstract

Chemical synthesis of DNA sequences provides a powerful tool for modifying genes and for studying gene structure, expression and function. Modified genes and consequently protein/enzymes can bridge genomics and proteomics research or facilitate commercial applications of gene and protein technologies. In this review, we will summarize various strategies, designing softwares and error correction methods for chemical gene synthesis, particularly for the synthesis and assembly of long DNA molecules based on polymerase cycling assembly. Also, we will briefly discuss some of the major applications of chemical synthesis of DNA sequences in basic research and applied areas.

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Year:  2008        PMID: 18393987     DOI: 10.1111/j.1574-6976.2008.00109.x

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  17 in total

1.  Chemical synthesis of the mouse mitochondrial genome.

Authors:  Daniel G Gibson; Hamilton O Smith; Clyde A Hutchison; J Craig Venter; Chuck Merryman
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

Review 2.  Genome engineering.

Authors:  Peter A Carr; George M Church
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

3.  Site-specific fluorescent probing of RNA molecules by unnatural base-pair transcription for local structural conformation analysis.

Authors:  Yasushi Hikida; Michiko Kimoto; Shigeyuki Yokoyama; Ichiro Hirao
Journal:  Nat Protoc       Date:  2010-06-24       Impact factor: 13.491

4.  Synthetic zinc finger nuclease design and rapid assembly.

Authors:  Mark J Osborn; Anthony P DeFeo; Bruce R Blazar; Jakub Tolar
Journal:  Hum Gene Ther       Date:  2011-08-10       Impact factor: 5.695

5.  Construction of a synthetic protein using PCR with a high essential amino acid content for nutritional purposes.

Authors:  Ma I Sánchez-Crisóstomo; M I Rojo-López; A Sharma; J C Cancino-Diaz; H Jaimes-Díaz; J A Ariza-Ortega; E Madrigal-Santillán; G Betanzos-Cabrera
Journal:  Mol Biol Rep       Date:  2019-02-01       Impact factor: 2.316

6.  Processing DNA molecules as text.

Authors:  Uri Shabi; Shai Kaplan; Gregory Linshiz; Tuval Benyehezkel; Hen Buaron; Yair Mazor; Ehud Shapiro
Journal:  Syst Synth Biol       Date:  2010-06-15

7.  Crystallization studies of the murine c-di-GMP sensor protein STING.

Authors:  Yi-Che Su; Zhi-Le Tu; Chao-Yu Yang; Ko-Hsin Chin; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-07-31

8.  Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides.

Authors:  Daniel G Gibson
Journal:  Nucleic Acids Res       Date:  2009-09-10       Impact factor: 16.971

9.  A mutant screening method by critical annealing temperature-PCR for site-directed mutagenesis.

Authors:  Ying Liu; Ting Wu; Jian Song; Xuelian Chen; Yu Zhang; Yu Wan
Journal:  BMC Biotechnol       Date:  2013-03-11       Impact factor: 2.563

10.  SpeedyGenes: an improved gene synthesis method for the efficient production of error-corrected, synthetic protein libraries for directed evolution.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Protein Eng Des Sel       Date:  2014-08-09       Impact factor: 1.650

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