Literature DB >> 18393676

Energy flow in proteins.

David M Leitner1.   

Abstract

Energy flows anisotropically through the residues and vibrational states of globular proteins. A variety of experimental and computational studies have identified energy transport channels traversing many residues, in some cases connecting functional regions, potentially important in allostery, and in other cases having no apparent function. This property and the diffusion of energy in proteins are mimicked by transport on a percolation cluster. I review work that addresses connections between globular proteins, percolation clusters, and the similarity of energy flow and thermal transport in these systems. I also review experimental and theoretical studies of the anisotropic flow of energy through the vibrational states of a protein, a property that also can be understood by comparison with simple model disordered systems.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18393676     DOI: 10.1146/annurev.physchem.59.032607.093606

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  43 in total

1.  Anomalies in the vibrational dynamics of proteins are a consequence of fractal-like structure.

Authors:  Shlomi Reuveni; Rony Granek; Joseph Klafter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-16       Impact factor: 11.205

2.  Interaction energy based protein structure networks.

Authors:  M S Vijayabaskar; Saraswathi Vishveshwara
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

3.  A Biophysical Perspective on Enzyme Catalysis.

Authors:  Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

4.  Coefficients for active transport and thermogenesis of Ca2+-ATPase isoforms.

Authors:  Signe Kjelstrup; Daniel Barragán; Dick Bedeaux
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

Review 5.  Fractal symmetry of protein interior: what have we learned?

Authors:  Anirban Banerji; Indira Ghosh
Journal:  Cell Mol Life Sci       Date:  2011-05-26       Impact factor: 9.261

6.  Direct observation of subpicosecond vibrational dynamics in photoexcited myoglobin.

Authors:  C Ferrante; E Pontecorvo; G Cerullo; M H Vos; T Scopigno
Journal:  Nat Chem       Date:  2016-09-05       Impact factor: 24.427

7.  Learning generative models of molecular dynamics.

Authors:  Narges Sharif Razavian; Hetunandan Kamisetty; Christopher J Langmead
Journal:  BMC Genomics       Date:  2012-01-17       Impact factor: 3.969

8.  A wave-mechanical model of incoherent quasielastic scattering in complex systems.

Authors:  Hans Frauenfelder; Paul W Fenimore; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

9.  Dynamical traps lead to the slowing down of intramolecular vibrational energy flow.

Authors:  Paranjothy Manikandan; Srihari Keshavamurthy
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

10.  Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligases.

Authors:  Jin Liu; Ruth Nussinov
Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.