Literature DB >> 18392762

Type II opsins: evolutionary origin by internal domain duplication?

Nicholas D Larusso1, Brian E Ruttenberg, Ambuj K Singh, Todd H Oakley.   

Abstract

Opsins are a large group of proteins with seven transmembrane segments (TMSs) that are found in all domains of life. There are two types of opsins that are sometimes considered nonhomologous: type I is known from prokaryotes and some eukaryotes, while type II is known only from Eumetazoan animals. Type II opsins are members of the family of G-protein coupled receptors (GPCRs), which facilitate signal transduction across cell membranes. While previous studies have concluded that multiple transmembrane-containing protein families-including type I opsins-originated by internal domain duplication, the origin of type II opsins has been speculated on but never tested. Here we show that type II opsins do not appear to have originated through a similar internal domain duplication event. This provides further evidence that the two types of opsins are nonhomologous, indicating a convergent evolutionary origin, in which both groups of opsins evolved a seven-TM structure and light sensitivity independently. This convergence may indicate an important role for seven-TM protein structure for retinal-based light sensitivity.

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Year:  2008        PMID: 18392762     DOI: 10.1007/s00239-008-9076-6

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  26 in total

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Authors:  E Ebnet; M Fischer; W Deininger; P Hegemann
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Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
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Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  SOSUI: classification and secondary structure prediction system for membrane proteins.

Authors:  T Hirokawa; S Boon-Chieng; S Mitaku
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

5.  Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation.

Authors:  K Ihara; T Umemura; I Katagiri; T Kitajima-Ihara; Y Sugiyama; Y Kimura; Y Mukohata
Journal:  J Mol Biol       Date:  1999-01-08       Impact factor: 5.469

6.  Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.

Authors:  M Cserzö; E Wallin; I Simon; G von Heijne; A Elofsson
Journal:  Protein Eng       Date:  1997-06

7.  Two hypotheses--one answer. Sequence comparison does not support an evolutionary link between halobacterial retinal proteins including bacteriorhodopsin and eukaryotic G-protein-coupled receptors.

Authors:  J Soppa
Journal:  FEBS Lett       Date:  1994-03-28       Impact factor: 4.124

Review 8.  Phylogenetic relationships among bacteriorhodopsins.

Authors:  G Kuan; M H Saier
Journal:  Res Microbiol       Date:  1994-05       Impact factor: 3.992

Review 9.  Homologues of archaeal rhodopsins in plants, animals and fungi: structural and functional predications for a putative fungal chaperone protein.

Authors:  Y Zhai; W H Heijne; D W Smith; M H Saier
Journal:  Biochim Biophys Acta       Date:  2001-04-02

10.  The origins of novel protein interactions during animal opsin evolution.

Authors:  David C Plachetzki; Bernard M Degnan; Todd H Oakley
Journal:  PLoS One       Date:  2007-10-17       Impact factor: 3.240

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  9 in total

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Review 2.  The predictability of evolution: glimpses into a post-Darwinian world.

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Journal:  Naturwissenschaften       Date:  2009-09-23

3.  Evidence from Chlamydomonas on the photoactivation of rhodopsins without isomerization of their chromophore.

Authors:  Kenneth W Foster; Jureepan Saranak; Sonja Krane; Randy L Johnson; Koji Nakanishi
Journal:  Chem Biol       Date:  2011-06-24

4.  The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway.

Authors:  David C Plachetzki; Caitlin R Fong; Todd H Oakley
Journal:  Proc Biol Sci       Date:  2010-03-10       Impact factor: 5.349

5.  Relocating the active-site lysine in rhodopsin and implications for evolution of retinylidene proteins.

Authors:  Erin L Devine; Daniel D Oprian; Douglas L Theobald
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-31       Impact factor: 11.205

6.  An empirical test of convergent evolution in rhodopsins.

Authors:  Kristine A Mackin; Richard A Roy; Douglas L Theobald
Journal:  Mol Biol Evol       Date:  2013-09-27       Impact factor: 16.240

7.  A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site.

Authors:  Erin A Becker; Andrew I Yao; Phillip M Seitzer; Tobias Kind; Ting Wang; Rich Eigenheer; Katie S Y Shao; Vladimir Yarov-Yarovoy; Marc T Facciotti
Journal:  PLoS One       Date:  2016-06-21       Impact factor: 3.240

Review 8.  The evolution of eyes and visually guided behaviour.

Authors:  Dan-Eric Nilsson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-10-12       Impact factor: 6.237

9.  Pseudo-Symmetric Assembly of Protodomains as a Common Denominator in the Evolution of Polytopic Helical Membrane Proteins.

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Journal:  J Mol Evol       Date:  2020-03-18       Impact factor: 2.395

  9 in total

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