Literature DB >> 23904486

Relocating the active-site lysine in rhodopsin and implications for evolution of retinylidene proteins.

Erin L Devine1, Daniel D Oprian, Douglas L Theobald.   

Abstract

Type I and type II rhodopsins share several structural features including a G protein-coupled receptor fold and a highly conserved active-site Lys residue in the seventh transmembrane segment of the protein. However, the two families lack significant sequence similarity that would indicate common ancestry. Consequently, the rhodopsin fold and conserved Lys are widely thought to have arisen from functional constraints during convergent evolution. To test for the existence of such a constraint, we asked whether it were possible to relocate the highly conserved Lys296 in the visual pigment bovine rhodopsin. We show here that the Lys can be moved to three other locations in the protein while maintaining the ability to form a pigment with 11-cis-retinal and activate the G protein transducin in a light-dependent manner. These results contradict the convergent hypothesis and support the homology of type I and type II rhodopsins by divergent evolution from a common ancestral protein.

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Year:  2013        PMID: 23904486      PMCID: PMC3746867          DOI: 10.1073/pnas.1306826110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Spectral tuning in the human blue cone pigment.

Authors:  J I Fasick; N Lee; D D Oprian
Journal:  Biochemistry       Date:  1999-09-07       Impact factor: 3.162

2.  Constitutive activation of opsin by mutation of methionine 257 on transmembrane helix 6.

Authors:  M Han; S O Smith; T P Sakmar
Journal:  Biochemistry       Date:  1998-06-02       Impact factor: 3.162

3.  SCOP: a structural classification of proteins database for the investigation of sequences and structures.

Authors:  A G Murzin; S E Brenner; T Hubbard; C Chothia
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

4.  Two hypotheses--one answer. Sequence comparison does not support an evolutionary link between halobacterial retinal proteins including bacteriorhodopsin and eukaryotic G-protein-coupled receptors.

Authors:  J Soppa
Journal:  FEBS Lett       Date:  1994-03-28       Impact factor: 4.124

5.  Changing the location of the Schiff base counterion in rhodopsin.

Authors:  E A Zhukovsky; P R Robinson; D D Oprian
Journal:  Biochemistry       Date:  1992-10-27       Impact factor: 3.162

6.  A mutant rhodopsin photoproduct with a protonated Schiff base displays an active-state conformation: a Fourier-transform infrared spectroscopy study.

Authors:  K Fahmy; F Siebert; T P Sakmar
Journal:  Biochemistry       Date:  1994-11-22       Impact factor: 3.162

7.  Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin.

Authors:  J Nathans
Journal:  Biochemistry       Date:  1990-10-16       Impact factor: 3.162

8.  Characterization of rhodopsin-transducin interaction: a mutant rhodopsin photoproduct with a protonated Schiff base activates transducin.

Authors:  T A Zvyaga; K Fahmy; T P Sakmar
Journal:  Biochemistry       Date:  1994-08-16       Impact factor: 3.162

9.  Structure and function in rhodopsin. Separation and characterization of the correctly folded and misfolded opsins produced on expression of an opsin mutant gene containing only the native intradiscal cysteine codons.

Authors:  K D Ridge; Z Lu; X Liu; H G Khorana
Journal:  Biochemistry       Date:  1995-03-14       Impact factor: 3.162

10.  Transducin activation by rhodopsin without a covalent bond to the 11-cis-retinal chromophore.

Authors:  E A Zhukovsky; P R Robinson; D D Oprian
Journal:  Science       Date:  1991-02-01       Impact factor: 47.728

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  18 in total

1.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

2.  Relocating the Active-Site Lysine in Rhodopsin: 2. Evolutionary Intermediates.

Authors:  Erin L Devine; Douglas L Theobald; Daniel D Oprian
Journal:  Biochemistry       Date:  2016-08-12       Impact factor: 3.162

3.  Expression, purification, and spectral tuning of RhoGC, a retinylidene/guanylyl cyclase fusion protein and optogenetics tool from the aquatic fungus Blastocladiella emersonii.

Authors:  Melissa M Trieu; Erin L Devine; Lindsey B Lamarche; Aaron E Ammerman; Jordan A Greco; Robert R Birge; Douglas L Theobald; Daniel D Oprian
Journal:  J Biol Chem       Date:  2017-05-04       Impact factor: 5.157

Review 4.  Retinoids and Retinal Diseases.

Authors:  Philip D Kiser; Krzysztof Palczewski
Journal:  Annu Rev Vis Sci       Date:  2016-07-18       Impact factor: 6.422

Review 5.  Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; John L Spudich
Journal:  Annu Rev Biochem       Date:  2017-03-09       Impact factor: 23.643

6.  Activation of retinal ganglion cells using a biomimetic artificial retina.

Authors:  Jordan A Greco; Nicole L Wagner; Ralph J Jensen; Daniel B Lawrence; Matthew J Ranaghan; Megan N Sandberg; Daniel J Sandberg; Robert R Birge
Journal:  J Neural Eng       Date:  2021-12-01       Impact factor: 5.379

Review 7.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

8.  Purification and Characterization of RhoPDE, a Retinylidene/Phosphodiesterase Fusion Protein and Potential Optogenetic Tool from the Choanoflagellate Salpingoeca rosetta.

Authors:  Lindsey B Lamarche; Ramasamy P Kumar; Melissa M Trieu; Erin L Devine; Luke E Cohen-Abeles; Douglas L Theobald; Daniel D Oprian
Journal:  Biochemistry       Date:  2017-10-18       Impact factor: 3.162

9.  An empirical test of convergent evolution in rhodopsins.

Authors:  Kristine A Mackin; Richard A Roy; Douglas L Theobald
Journal:  Mol Biol Evol       Date:  2013-09-27       Impact factor: 16.240

10.  A rhodopsin-guanylyl cyclase gene fusion functions in visual perception in a fungus.

Authors:  Gabriela M Avelar; Robert I Schumacher; Paulo A Zaini; Guy Leonard; Thomas A Richards; Suely L Gomes
Journal:  Curr Biol       Date:  2014-05-15       Impact factor: 10.834

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