Literature DB >> 18390596

Synthetic nanopores as a test case for ion channel theories: the anomalous mole fraction effect without single filing.

Dirk Gillespie1, Dezso Boda, Yan He, Pavel Apel, Zuzanna S Siwy.   

Abstract

The predictions of a theory for the anomalous mole fraction effect (AMFE) are tested experimentally with synthetic nanopores in plastic. The negatively charged synthetic nanopores under consideration are highly cation selective and 50 A in diameter at their smallest point. These pores exhibit an AMFE in mixtures of Ca(2+) and monovalent cations. An AMFE occurs when the conductance through a pore is lower in a mixture of salts than in the pure salts at the same concentration. For ion channels, the textbook interpretation of the AMFE is that multiple ions move through the pore in coordinated, single-file motion. However, because the synthetic nanopores are so wide, their AMFE shows that single filing is not necessary for the AMFE. It is shown that the AMFE in the synthetic nanopores is explained by a theory of preferential ion selectivity. The unique properties of the synthetic nanopores allow us to experimentally confirm several predictions of this theory. These same properties make synthetic nanopores an interesting new platform to test theories of ion channel permeation and selectivity in general.

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Year:  2008        PMID: 18390596      PMCID: PMC2440478          DOI: 10.1529/biophysj.107.127985

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

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Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

2.  Diffusion constant of K+ inside Gramicidin A: a comparative study of four computational methods.

Authors:  Artem B Mamonov; Maria G Kurnikova; Rob D Coalson
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3.  Nanofluidic diode.

Authors:  Ivan Vlassiouk; Zuzanna S Siwy
Journal:  Nano Lett       Date:  2007-02-21       Impact factor: 11.189

4.  Poisson-Nernst-Planck model of ion current rectification through a nanofluidic diode.

Authors:  Dragoş Constantin; Zuzanna S Siwy
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-15

5.  Ionic conduction, rectification, and selectivity in single conical nanopores.

Authors:  Javier Cervera; Birgitta Schiedt; Reinhard Neumann; Salvador Mafé; Patricio Ramírez
Journal:  J Chem Phys       Date:  2006-03-14       Impact factor: 3.488

6.  Combined effect of pore radius and protein dielectric coefficient on the selectivity of a calcium channel.

Authors:  Dezso Boda; Mónika Valiskó; Bob Eisenberg; Wolfgang Nonner; Douglas Henderson; Dirk Gillespie
Journal:  Phys Rev Lett       Date:  2007-04-17       Impact factor: 9.161

7.  Nanoprecipitation-assisted ion current oscillations.

Authors:  Matthew R Powell; Michael Sullivan; Ivan Vlassiouk; Dragos Constantin; Olivier Sudre; Craig C Martens; Robert S Eisenberg; Zuzanna S Siwy
Journal:  Nat Nanotechnol       Date:  2007-12-23       Impact factor: 39.213

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Authors:  D P Chen; R S Eisenberg; J W Jerome; C W Shu
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

9.  Potassium channels as multi-ion single-file pores.

Authors:  B Hille; W Schwarz
Journal:  J Gen Physiol       Date:  1978-10       Impact factor: 4.086

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Authors:  I I Ismailov; V G Shlyonsky; O Alvarez; D J Benos
Journal:  J Physiol       Date:  1997-10-15       Impact factor: 5.182

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  21 in total

1.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

2.  Sieving experiments and pore diameter: it's not a simple relationship.

Authors:  Daniel Krauss; Dirk Gillespie
Journal:  Eur Biophys J       Date:  2010-05-11       Impact factor: 1.733

3.  Molecular control of ionic conduction in polymer nanopores.

Authors:  Eduardo R Cruz-Chu; Thorsten Ritz; Zuzanna S Siwy; Klaus Schulten
Journal:  Faraday Discuss       Date:  2009       Impact factor: 4.008

4.  The anomalous mole fraction effect in calcium channels: a measure of preferential selectivity.

Authors:  Dirk Gillespie; Dezso Boda
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

5.  Reinterpreting the anomalous mole fraction effect: the ryanodine receptor case study.

Authors:  Dirk Gillespie; Janhavi Giri; Michael Fill
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

Review 6.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

Review 7.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

8.  Enhancement of transport selectivity through nano-channels by non-specific competition.

Authors:  Anton Zilman; Stefano Di Talia; Tijana Jovanovic-Talisman; Brian T Chait; Michael P Rout; Marcelo O Magnasco
Journal:  PLoS Comput Biol       Date:  2010-06-10       Impact factor: 4.475

9.  Ion correlations in nanofluidic channels: effects of ion size, valence, and concentration on voltage- and pressure-driven currents.

Authors:  Jordan Hoffmann; Dirk Gillespie
Journal:  Langmuir       Date:  2013-01-15       Impact factor: 3.882

10.  Ionic selectivity in L-type calcium channels by electrostatics and hard-core repulsion.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie; Wolfgang Nonner
Journal:  J Gen Physiol       Date:  2009-05       Impact factor: 4.086

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