Literature DB >> 19843453

Reinterpreting the anomalous mole fraction effect: the ryanodine receptor case study.

Dirk Gillespie1, Janhavi Giri, Michael Fill.   

Abstract

The origin of the anomalous mole fraction effect (AMFE) in calcium channels is explored with a model of the ryanodine receptor. This model predicted and experiments verified new AMFEs in the cardiac isoform. In mole fraction experiments, conductance is measured in mixtures of ion species X and Y as their relative amounts (mole fractions) vary. This curve can have a minimum (an AMFE). The traditional interpretation of the AMFE is that multiple interacting ions move through the pore in a single file. Mole fraction curves without minima (no AMFEs) are generally interpreted as X displacing Y from the pore in a proportion larger than its bath mole fraction (preferential selectivity). We find that the AMFE is also caused by preferential selectivity of X over Y, if X and Y have similar conductances. This is a prediction applicable to any channel and provides a fundamentally different explanation of the AMFE that does not require single filing or multiple occupancy: preferential selectivity causes the resistances to current flow in the baths, channel vestibules, and selectivity filter to change differently with mole fraction, and produce the AMFE.

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Year:  2009        PMID: 19843453      PMCID: PMC2764102          DOI: 10.1016/j.bpj.2009.08.009

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

1.  Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics.

Authors:  B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Permeation of ions across the potassium channel: Brownian dynamics studies.

Authors:  S H Chung; T W Allen; M Hoyles; S Kuyucak
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

3.  Hierarchical approach to predicting permeation in ion channels.

Authors:  R J Mashl; Y Tang; J Schnitzer; E Jakobsson
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

4.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

5.  Selectivity and permeation in calcium release channel of cardiac muscle: alkali metal ions.

Authors:  D P Chen; L Xu; A Tripathy; G Meissner; B Eisenberg
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

6.  Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels.

Authors:  W Nonner; B Eisenberg
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

Review 7.  Computing the field in proteins and channels.

Authors:  R S Eisenberg
Journal:  J Membr Biol       Date:  1996-03       Impact factor: 1.843

8.  Probing the role of negatively charged amino acid residues in ion permeation of skeletal muscle ryanodine receptor.

Authors:  Ying Wang; Le Xu; Daniel A Pasek; Dirk Gillespie; Gerhard Meissner
Journal:  Biophys J       Date:  2005-04-29       Impact factor: 4.033

9.  Two rings of negative charges in the cytosolic vestibule of type-1 ryanodine receptor modulate ion fluxes.

Authors:  Le Xu; Ying Wang; Dirk Gillespie; Gerhard Meissner
Journal:  Biophys J       Date:  2005-10-20       Impact factor: 4.033

10.  Regulation of cardiac muscle Ca2+ release channel by sarcoplasmic reticulum lumenal Ca2+.

Authors:  L Xu; G Meissner
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

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  21 in total

1.  Sieving experiments and pore diameter: it's not a simple relationship.

Authors:  Daniel Krauss; Dirk Gillespie
Journal:  Eur Biophys J       Date:  2010-05-11       Impact factor: 1.733

2.  Sarcoplasmic reticulum K(+) (TRIC) channel does not carry essential countercurrent during Ca(2+) release.

Authors:  Tao Guo; Alma Nani; Stephen Shonts; Matthew Perryman; Haiyan Chen; Thomas Shannon; Dirk Gillespie; Michael Fill
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

3.  Analyzing the components of the free-energy landscape in a calcium selective ion channel by Widom's particle insertion method.

Authors:  Dezso Boda; Janhavi Giri; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  J Chem Phys       Date:  2011-02-07       Impact factor: 3.488

Review 4.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

5.  Is ryanodine receptor a calcium or magnesium channel? Roles of K+ and Mg2+ during Ca2+ release.

Authors:  Dirk Gillespie; Haiyan Chen; Michael Fill
Journal:  Cell Calcium       Date:  2012-03-03       Impact factor: 6.817

Review 6.  Comparison of permeation mechanisms in sodium-selective ion channels.

Authors:  Céline Boiteux; Emelie Flood; Toby W Allen
Journal:  Neurosci Lett       Date:  2018-05-26       Impact factor: 3.046

7.  Current and selectivity in a model sodium channel under physiological conditions: Dynamic Monte Carlo simulations.

Authors:  Eva Csányi; Dezso Boda; Dirk Gillespie; Tamás Kristóf
Journal:  Biochim Biophys Acta       Date:  2011-11-04

8.  Ion correlations in nanofluidic channels: effects of ion size, valence, and concentration on voltage- and pressure-driven currents.

Authors:  Jordan Hoffmann; Dirk Gillespie
Journal:  Langmuir       Date:  2013-01-15       Impact factor: 3.882

9.  Protein structure and ionic selectivity in calcium channels: selectivity filter size, not shape, matters.

Authors:  Attila Malasics; Dirk Gillespie; Wolfgang Nonner; Douglas Henderson; Bob Eisenberg; Dezso Boda
Journal:  Biochim Biophys Acta       Date:  2009-10-07

Review 10.  Pernicious attrition and inter-RyR2 CICR current control in cardiac muscle.

Authors:  Dirk Gillespie; Michael Fill
Journal:  J Mol Cell Cardiol       Date:  2013-01-28       Impact factor: 5.000

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