Literature DB >> 18385838

A highly fluorescent nucleoside analog based on thieno[3,4-d]pyrimidine senses mismatched pairing.

Seergazhi G Srivatsan1, Haim Weizman, Yitzhak Tor.   

Abstract

A highly emissive nucleobase analog, based on a thieno[3,4-d]pyrimidine core, is enzymatically incorporated into RNA oilgonucleotides that function as base discriminating fluorescent probes.

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Year:  2008        PMID： 18385838      PMCID： PMC5263222          DOI： 10.1039/b801054d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN： 1477-0520            Impact factor:   3.876


  41 in total

1.  Sequence dependence of energy transfer in DNA oligonucleotides.

Authors:  D G Xu; T M Nordlund
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Gene-based SNP discovery as part of the Japanese Millennium Genome Project: identification of 190,562 genetic variations in the human genome. Single-nucleotide polymorphism.

Authors:  Hisanori Haga; Ryo Yamada; Yozo Ohnishi; Yusuke Nakamura; Toshihiro Tanaka
Journal:  J Hum Genet       Date:  2002       Impact factor: 3.172

3.  A haplotype map of the human genome.

Authors: 
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4.  Single nucleotide polymorphisms (SNPs): detection, interpretation, and application.

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Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

Review 5.  SNPs in forensic genetics: a review on SNP typing methodologies.

Authors:  Beatriz Sobrino; María Brión; Angel Carracedo
Journal:  Forensic Sci Int       Date:  2005-01-11       Impact factor: 2.395

6.  Twin probes as a novel tool for the detection of single-nucleotide polymorphisms.

Authors:  Erhan Ergen; Markus Weber; Josemon Jacob; Andreas Herrmann; Klaus Müllen
Journal:  Chemistry       Date:  2006-05-03       Impact factor: 5.236

7.  Design of a novel G-quenched molecular beacon: a simple and efficient strategy for DNA sequence analysis.

Authors:  Yoshio Saito; Erika Mizuno; Subhendu Sekhar Bag; Isamu Suzuka; Isao Saito
Journal:  Chem Commun (Camb)       Date:  2007-08-29       Impact factor: 6.222

8.  Probing DNA sequences in solution with a monomer-excimer fluorescence color change.

Authors:  P L Paris; J M Langenhan; E T Kool
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

9.  Allele specific C-bulge probes with one unique fluorescent molecule discriminate the single nucleotide polymorphism in DNA.

Authors:  Fumie Takei; Hitoshi Suda; Masaki Hagihara; Jinhua Zhang; Akio Kobori; Kazuhiko Nakatani
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

10.  Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2'-hydroxyl effects.

Authors:  S Wang; E T Kool
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162
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  18 in total

1.  Fluorescent nucleoside analogue displays enhanced emission upon pairing with guanine.

Authors:  Yun Xie; Tucker Maxson; Yitzhak Tor
Journal:  Org Biomol Chem       Date:  2010-09-23       Impact factor: 3.876

2.  A highly emissive fluorescent nucleoside that signals the activity of toxic ribosome-inactivating proteins.

Authors:  Seergazhi G Srivatsan; Nicholas J Greco; Yitzhak Tor
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 3.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

4.  Enzymatic incorporation and utilization of an emissive 6-azauridine.

Authors:  Patrycja A Hopkins; Lisa S McCoy; Yitzhak Tor
Journal:  Org Biomol Chem       Date:  2017-01-18       Impact factor: 3.876

5.  Theoretical study on absorption and emission spectra of adenine analogues.

Authors:  Hongxia Liu; Qixia Song; Yan Yang; Yan Li; Haijun Wang
Journal:  J Mol Model       Date:  2014-03-16       Impact factor: 1.810

6.  Emissive RNA alphabet.

Authors:  Dongwon Shin; Renatus W Sinkeldam; Yitzhak Tor
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7.  Functionalized tricyclic cytosine analogues provide nucleoside fluorophores with improved photophysical properties and a range of solvent sensitivities.

Authors:  Brittney J Rodgers; Nada A Elsharif; Nisha Vashisht; Macy M Mingus; Mark A Mulvahill; Gudrun Stengel; Robert D Kuchta; Byron W Purse
Journal:  Chemistry       Date:  2013-12-05       Impact factor: 5.236

8.  Enzymatic incorporation of emissive pyrimidine ribonucleotides.

Authors:  Seergazhi G Srivatsan; Yitzhak Tor
Journal:  Chem Asian J       Date:  2009-03-02

9.  FRET enabled real time detection of RNA-small molecule binding.

Authors:  Yun Xie; Andrew V Dix; Yitzhak Tor
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

10.  Highly efficient incorporation of the fluorescent nucleotide analogs tC and tCO by Klenow fragment.

Authors:  Peter Sandin; Gudrun Stengel; Thomas Ljungdahl; Karl Börjesson; Bertil Macao; L Marcus Wilhelmsson
Journal:  Nucleic Acids Res       Date:  2009-04-28       Impact factor: 16.971
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