Literature DB >> 18377928

Engineering protein allostery: 1.05 A resolution structure and enzymatic properties of a Na+-activated trypsin.

Michael J Page1, Christopher J Carrell, Enrico Di Cera.   

Abstract

Some trypsin-like proteases are endowed with Na(+)-dependent allosteric enhancement of catalytic activity, but this important mechanism has been difficult to engineer in other members of the family. Replacement of 19 amino acids in Streptomyces griseus trypsin targeting the active site and the Na(+)-binding site were found necessary to generate efficient Na(+) activation. Remarkably, this property was linked to the acquisition of a new substrate selectivity profile similar to that of factor Xa, a Na(+)-activated protease involved in blood coagulation. The X-ray crystal structure of the mutant trypsin solved to 1.05 A resolution defines the engineered Na(+) site and active site loops in unprecedented detail. The results demonstrate that trypsin can be engineered into an efficient allosteric protease, and that Na(+) activation is interwoven with substrate selectivity in the trypsin scaffold.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18377928      PMCID: PMC2423008          DOI: 10.1016/j.jmb.2008.03.003

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

1.  Trypsin mutants for structure-based drug design: expression, refolding and crystallisation.

Authors:  Daniel Rauh; Sabine Reyda; Gerhard Klebe; Milton T Stubbs
Journal:  Biol Chem       Date:  2002 Jul-Aug       Impact factor: 3.915

Review 2.  A structural perspective on enzymes activated by monovalent cations.

Authors:  Enrico Di Cera
Journal:  J Biol Chem       Date:  2005-11-02       Impact factor: 5.157

3.  Structural identification of the pathway of long-range communication in an allosteric enzyme.

Authors:  Prafull S Gandhi; Zhiwei Chen; F Scott Mathews; Enrico Di Cera
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

4.  Identification of a binding site for quaternary amines in factor Xa.

Authors:  D Monnaie; D Arosio; N Griffon; T Rose; A R Rezaie; E Di Cera
Journal:  Biochemistry       Date:  2000-05-09       Impact factor: 3.162

5.  Refined crystal structure of Streptomyces griseus trypsin at 1.7 A resolution.

Authors:  R J Read; M N James
Journal:  J Mol Biol       Date:  1988-04-05       Impact factor: 5.469

6.  Valence screening of water in protein crystals reveals potential Na+ binding sites.

Authors:  M Nayal; E Di Cera
Journal:  J Mol Biol       Date:  1996-02-23       Impact factor: 5.469

7.  Converting trypsin to chymotrypsin: residue 172 is a substrate specificity determinant.

Authors:  L Hedstrom; J J Perona; W J Rutter
Journal:  Biochemistry       Date:  1994-07-26       Impact factor: 3.162

8.  Sodium binding site of factor Xa: role of sodium in the prothrombinase complex.

Authors:  A R Rezaie; X He
Journal:  Biochemistry       Date:  2000-02-22       Impact factor: 3.162

9.  Role of residue Phe225 in the cofactor-mediated, allosteric regulation of the serine protease coagulation factor VIIa.

Authors:  R J Petrovan; W Ruf
Journal:  Biochemistry       Date:  2000-11-28       Impact factor: 3.162

10.  Reconstructing the binding site of factor Xa in trypsin reveals ligand-induced structural plasticity.

Authors:  Sabine Reyda; Christian Sohn; Gerhard Klebe; Kathrin Rall; Dirk Ullmann; Hans Dieter Jakubke; Milton T Stubbs
Journal:  J Mol Biol       Date:  2003-01-31       Impact factor: 5.469

View more
  10 in total

Review 1.  Integrative systems and synthetic biology of cell-matrix adhesion sites.

Authors:  Eli Zamir
Journal:  Cell Adh Migr       Date:  2016-02-06       Impact factor: 3.405

2.  Redesigning allosteric activation in an enzyme.

Authors:  Sadhna Rana; Nicola Pozzi; Leslie A Pelc; Enrico Di Cera
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

Review 3.  Molecular Mechanisms of Enzyme Activation by Monovalent Cations.

Authors:  David W Gohara; Enrico Di Cera
Journal:  J Biol Chem       Date:  2016-07-26       Impact factor: 5.157

4.  Exploring modular allostery via interchangeable regulatory domains.

Authors:  Yifei Fan; Penelope J Cross; Geoffrey B Jameson; Emily J Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

5.  Combinatorial enzyme design probes allostery and cooperativity in the trypsin fold.

Authors:  Michael J Page; Enrico Di Cera
Journal:  J Mol Biol       Date:  2010-04-24       Impact factor: 5.469

Review 6.  Proteases as therapeutics.

Authors:  Charles S Craik; Michael J Page; Edwin L Madison
Journal:  Biochem J       Date:  2011-04-01       Impact factor: 3.857

7.  Functional identification and characterization of sodium binding sites in Na symporters.

Authors:  Donald D F Loo; Xuan Jiang; Edurne Gorraitz; Bruce A Hirayama; Ernest M Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

8.  Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles.

Authors:  Christopher L McClendon; Gregory Friedland; David L Mobley; Homeira Amirkhani; Matthew P Jacobson
Journal:  J Chem Theory Comput       Date:  2009-09-08       Impact factor: 6.006

9.  Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.

Authors:  Robert Kalescky; Hongyu Zhou; Jin Liu; Peng Tao
Journal:  PLoS Comput Biol       Date:  2016-04-26       Impact factor: 4.475

10.  Substrate-bound outward-open structure of a Na+-coupled sialic acid symporter reveals a new Na+ site.

Authors:  Weixiao Y Wahlgren; Elin Dunevall; Rachel A North; Aviv Paz; Mariafrancesca Scalise; Paola Bisignano; Johan Bengtsson-Palme; Parveen Goyal; Elin Claesson; Rhawnie Caing-Carlsson; Rebecka Andersson; Konstantinos Beis; Ulf J Nilsson; Anne Farewell; Lorena Pochini; Cesare Indiveri; Michael Grabe; Renwick C J Dobson; Jeff Abramson; S Ramaswamy; Rosmarie Friemann
Journal:  Nat Commun       Date:  2018-05-01       Impact factor: 14.919

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.