Literature DB >> 18370076

Triplex-mediated gene modification.

Erica B Schleifman1, Joanna Y Chin, Peter M Glazer.   

Abstract

Gene targeting with DNA-binding molecules such as triplex-forming oligonucleotides or peptide nucleic acids can be utilized to direct mutagenesis or induce recombination site-specifically. In this chapter, several detailed protocols are described for the design and use of triplex-forming molecules to bind and mediate gene modification at specific chromosomal targets. Target site identification, binding molecule design, as well as various methods to test binding and assess gene modification are described.

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Year:  2008        PMID: 18370076     DOI: 10.1007/978-1-59745-232-8_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

Review 1.  New approaches toward recognition of nucleic acid triple helices.

Authors:  Dev P Arya
Journal:  Acc Chem Res       Date:  2010-11-12       Impact factor: 22.384

Review 2.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

Review 3.  Polymer delivery systems for site-specific genome editing.

Authors:  Nicole Ali McNeer; Erica B Schleifman; Peter M Glazer; W Mark Saltzman
Journal:  J Control Release       Date:  2011-05-18       Impact factor: 9.776

4.  Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells.

Authors:  Jeane M Govan; Rajendra Uprety; James Hemphill; Mark O Lively; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2012-05-11       Impact factor: 5.100

5.  Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices.

Authors:  Hongjuan Xi; Sunil Kumar; Ljiljana Dosen-Micovic; Dev P Arya
Journal:  Biochimie       Date:  2010-02-16       Impact factor: 4.079

6.  Targeted genome modification via triple helix formation.

Authors:  Adele S Ricciardi; Nicole A McNeer; Kavitha K Anandalingam; W Mark Saltzman; Peter M Glazer
Journal:  Methods Mol Biol       Date:  2014

Review 7.  Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy.

Authors:  George Silva; Laurent Poirot; Roman Galetto; Julianne Smith; Guillermo Montoya; Philippe Duchateau; Frédéric Pâques
Journal:  Curr Gene Ther       Date:  2011-02       Impact factor: 4.391

8.  Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data.

Authors:  Fabian A Buske; Denis C Bauer; John S Mattick; Timothy L Bailey
Journal:  Genome Res       Date:  2012-05-01       Impact factor: 9.043

9.  The Mapping of Predicted Triplex DNA:RNA in the Drosophila Genome Reveals a Prominent Location in Development- and Morphogenesis-Related Genes.

Authors:  Claude Pasquier; Sandra Agnel; Alain Robichon
Journal:  G3 (Bethesda)       Date:  2017-07-05       Impact factor: 3.154

  9 in total

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