Literature DB >> 18369191

Crystallographic and biochemical studies revealing the structural basis for antizyme inhibitor function.

Shira Albeck1, Orly Dym, Tamar Unger, Zohar Snapir, Zippy Bercovich, Chaim Kahana.   

Abstract

Antizyme inhibitor (AzI) regulates cellular polyamine homeostasis by binding to the polyamine-induced protein, Antizyme (Az), with greater affinity than ornithine decarboxylase (ODC). AzI is highly homologous to ODC but is not enzymatically active. In order to understand these specific characteristics of AzI and its differences from ODC, we determined the 3D structure of mouse AzI to 2.05 A resolution. Both AzI and ODC crystallize as a dimer. However, fewer interactions at the dimer interface, a smaller buried surface area, and lack of symmetry of the interactions between residues from the two monomers in the AzI structure suggest that this dimeric structure is nonphysiological. In addition, the absence of residues and interactions required for pyridoxal 5'-phosphate (PLP) binding suggests that AzI does not bind PLP. Biochemical studies confirmed the lack of PLP binding and revealed that AzI exists as a monomer in solution while ODC is dimeric. Our findings that AzI exists as a monomer and is unable to bind PLP provide two independent explanations for its lack of enzymatic activity and suggest the basis for its enhanced affinity toward Az.

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Year:  2008        PMID: 18369191      PMCID: PMC2327289          DOI: 10.1110/ps.073427208

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  43 in total

1.  Long-range interactions in the dimer interface of ornithine decarboxylase are important for enzyme function.

Authors:  D P Myers; L K Jackson; V G Ipe; G E Murphy; M A Phillips
Journal:  Biochemistry       Date:  2001-11-06       Impact factor: 3.162

2.  Conformational changes in ornithine decarboxylase enable recognition by antizyme.

Authors:  J L Mitchell; H J Chen
Journal:  Biochim Biophys Acta       Date:  1990-01-19

3.  Role of Arg-277 in the binding of pyridoxal 5'-phosphate to Trypanosoma brucei ornithine decarboxylase.

Authors:  A L Osterman; H B Brooks; J Rizo; M A Phillips
Journal:  Biochemistry       Date:  1997-04-15       Impact factor: 3.162

4.  Purification and characterization of antizyme inhibitor of ornithine decarboxylase from rat liver.

Authors:  T Kitani; H Fujisawa
Journal:  Biochim Biophys Acta       Date:  1989-04-25

5.  Fluorometric determination of pyridoxal phosphate in enzymes.

Authors:  E Adams
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

6.  Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination.

Authors:  Y Murakami; S Matsufuji; T Kameji; S Hayashi; K Igarashi; T Tamura; K Tanaka; A Ichihara
Journal:  Nature       Date:  1992-12-10       Impact factor: 49.962

7.  Structural motifs for pyridoxal-5'-phosphate binding in decarboxylases: an analysis based on the crystal structure of the Lactobacillus 30a ornithine decarboxylase.

Authors:  C Momany; R Ghosh; M L Hackert
Journal:  Protein Sci       Date:  1995-05       Impact factor: 6.725

Review 8.  Polyamine metabolism and its importance in neoplastic growth and a target for chemotherapy.

Authors:  A E Pegg
Journal:  Cancer Res       Date:  1988-02-15       Impact factor: 12.701

9.  Intersubunit location of the active site of mammalian ornithine decarboxylase as determined by hybridization of site-directed mutants.

Authors:  K E Tobias; C Kahana
Journal:  Biochemistry       Date:  1993-06-08       Impact factor: 3.162

10.  Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme.

Authors:  S Matsufuji; T Matsufuji; Y Miyazaki; Y Murakami; J F Atkins; R F Gesteland; S Hayashi
Journal:  Cell       Date:  1995-01-13       Impact factor: 41.582

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  28 in total

1.  Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine.

Authors:  Xiaoyi Deng; Jeongmi Lee; Anthony J Michael; Diana R Tomchick; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  J Biol Chem       Date:  2010-06-08       Impact factor: 5.157

2.  Knockdown of ornithine decarboxylase antizyme 1 causes loss of uptake regulation leading to increased N1, N11-bis(ethyl)norspermine (BENSpm) accumulation and toxicity in NCI H157 lung cancer cells.

Authors:  Alison V Fraser; Andrew C Goodwin; Amy Hacker-Prietz; Elizabeth Sugar; Patrick M Woster; Robert A Casero
Journal:  Amino Acids       Date:  2011-08-04       Impact factor: 3.520

Review 3.  Polyamine synthesis as a target of MYC oncogenes.

Authors:  André S Bachmann; Dirk Geerts
Journal:  J Biol Chem       Date:  2018-11-07       Impact factor: 5.157

Review 4.  Mammalian polyamine metabolism and function.

Authors:  Anthony E Pegg
Journal:  IUBMB Life       Date:  2009-09       Impact factor: 3.885

5.  Recurrent emergence of catalytically inactive ornithine decarboxylase homologous forms that likely have regulatory function.

Authors:  Ivaylo P Ivanov; Andrew E Firth; John F Atkins
Journal:  J Mol Evol       Date:  2010-03-09       Impact factor: 2.395

6.  Novel interaction of ornithine decarboxylase with sepiapterin reductase regulates neuroblastoma cell proliferation.

Authors:  Ingo Lange; Dirk Geerts; David J Feith; Gabor Mocz; Jan Koster; André S Bachmann
Journal:  J Mol Biol       Date:  2013-10-01       Impact factor: 5.469

Review 7.  The antizyme family for regulating polyamines.

Authors:  Chaim Kahana
Journal:  J Biol Chem       Date:  2018-10-24       Impact factor: 5.157

8.  The polyamine metabolism genes ornithine decarboxylase and antizyme 2 predict aggressive behavior in neuroblastomas with and without MYCN amplification.

Authors:  Dirk Geerts; Jan Koster; David Albert; Dana-Lynn T Koomoa; David J Feith; Anthony E Pegg; Richard Volckmann; Huib Caron; Rogier Versteeg; André S Bachmann
Journal:  Int J Cancer       Date:  2010-05-01       Impact factor: 7.396

Review 9.  Disrupting polyamine homeostasis as a therapeutic strategy for neuroblastoma.

Authors:  Nicholas F Evageliou; Michael D Hogarty
Journal:  Clin Cancer Res       Date:  2009-09-29       Impact factor: 12.531

Review 10.  Antizyme and antizyme inhibitor, a regulatory tango.

Authors:  Chaim Kahana
Journal:  Cell Mol Life Sci       Date:  2009-04-28       Impact factor: 9.261

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