Literature DB >> 18368362

Model structure analysis in NEURON : toward interoperability among neural simulators.

Michael L Hines1, Tom M Morse, N T Carnevale.   

Abstract

One of the more important recent additions to the NEURON simulation environment is a tool called ModelView, which simplifies the task of understanding exactly what biological attributes are represented in a computational model. Here, we illustrate how ModelView contributes to the understanding of models and discuss its utility as a neuroinformatics tool for analyzing models in online databases and as a means for facilitating interoperability among simulators in computational neuroscience.

Mesh:

Year:  2007        PMID: 18368362      PMCID: PMC2768370          DOI: 10.1007/978-1-59745-520-6_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

Review 1.  NEURON: a tool for neuroscientists.

Authors:  M L Hines; N T Carnevale
Journal:  Neuroscientist       Date:  2001-04       Impact factor: 7.519

2.  Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell.

Authors:  Panayiota Poirazi; Terrence Brannon; Bartlett W Mel
Journal:  Neuron       Date:  2003-03-27       Impact factor: 17.173

3.  ModelDB: making models publicly accessible to support computational neuroscience.

Authors:  Michele Migliore; Thomas M Morse; Andrew P Davison; Luis Marenco; Gordon M Shepherd; Michael L Hines
Journal:  Neuroinformatics       Date:  2003
  3 in total
  13 in total

1.  ModelView for ModelDB: Online Presentation of Model Structure.

Authors:  Robert A McDougal; Thomas M Morse; Michael L Hines; Gordon M Shepherd
Journal:  Neuroinformatics       Date:  2015-10

2.  Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.

Authors:  William W Lytton; Alexandra H Seidenstein; Salvador Dura-Bernal; Robert A McDougal; Felix Schürmann; Michael L Hines
Journal:  Neural Comput       Date:  2016-08-24       Impact factor: 2.026

3.  Reproducibility in Computational Neuroscience Models and Simulations.

Authors:  Robert A McDougal; Anna S Bulanova; William W Lytton
Journal:  IEEE Trans Biomed Eng       Date:  2016-03-08       Impact factor: 4.538

4.  Abnormal Excitability of Oblique Dendrites Implicated in Early Alzheimer's: A Computational Study.

Authors:  Thomas M Morse; Nicholas T Carnevale; Pradeep G Mutalik; Michele Migliore; Gordon M Shepherd
Journal:  Front Neural Circuits       Date:  2010-05-31       Impact factor: 3.492

5.  Synaptic Activation of a Detailed Purkinje Cell Model Predicts Voltage-Dependent Control of Burst-Pause Responses in Active Dendrites.

Authors:  Stefano Masoli; Egidio D'Angelo
Journal:  Front Cell Neurosci       Date:  2017-09-13       Impact factor: 5.505

6.  Sloppy morphological tuning in identified neurons of the crustacean stomatogastric ganglion.

Authors:  Adriane G Otopalik; Marie L Goeritz; Alexander C Sutton; Ted Brookings; Cosmo Guerini; Eve Marder
Journal:  Elife       Date:  2017-02-08       Impact factor: 8.140

7.  Sharing Neuron Data: Carrots, Sticks, and Digital Records.

Authors:  Giorgio A Ascoli
Journal:  PLoS Biol       Date:  2015-10-08       Impact factor: 8.029

8.  Reaction-diffusion in the NEURON simulator.

Authors:  Robert A McDougal; Michael L Hines; William W Lytton
Journal:  Front Neuroinform       Date:  2013-11-15       Impact factor: 4.081

9.  Action potential processing in a detailed Purkinje cell model reveals a critical role for axonal compartmentalization.

Authors:  Stefano Masoli; Sergio Solinas; Egidio D'Angelo
Journal:  Front Cell Neurosci       Date:  2015-02-24       Impact factor: 5.505

10.  Computational modeling predicts the ionic mechanism of late-onset responses in unipolar brush cells.

Authors:  Sathyaa Subramaniyam; Sergio Solinas; Paola Perin; Francesca Locatelli; Sergio Masetto; Egidio D'Angelo
Journal:  Front Cell Neurosci       Date:  2014-08-20       Impact factor: 5.505

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