Literature DB >> 18366169

The effect of a trans-locked Gly-Pro alkene isostere on collagen triple helix stability.

Nan Dai1, Xiaodong J Wang, Felicia A Etzkorn.   

Abstract

An alkene isostere of Gly-trans-Pro was synthesized and incorporated into a host Ac-(Gly-Pro-Hyp)8-Gly-Gly-Tyr-NH2 peptide to investigate the effect of locking a proline amide bond. Proline amide bond isomerization is the slow step in collagen folding. By locking the amide, we hypothesized an increase in stability of the collagen triple helix. The substitution instead destabilized the collagen host peptide. The Tm value of the host control peptide was 50.0 degrees C, while the peptide containing the isostere, Ac-(Gly-Pro-Hyp)3-Gly-psi[(E)CH C]-Pro-Hyp-(Gly-Pro-Hyp)4-Gly-Gly-Tyr-NH2, had a Tm value of 28.3 degrees C. There are clearly factors that contribute to collagen stability and folding that we do not yet understand.

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Year:  2008        PMID: 18366169     DOI: 10.1021/ja711021m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

Review 1.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

2.  Stabilization of collagen-model, triple-helical peptides for in vitro and in vivo applications.

Authors:  Manishabrata Bhowmick; Gregg B Fields
Journal:  Methods Mol Biol       Date:  2013

3.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

4.  Hierarchically structured hydrogels utilizing multifunctional assembling peptides for 3D cell culture.

Authors:  Amber M Hilderbrand; Eden M Ford; Chen Guo; Jennifer D Sloppy; April M Kloxin
Journal:  Biomater Sci       Date:  2019-12-19       Impact factor: 6.843

5.  Prolyl 4-Hydroxylase: Substrate Isosteres in Which an (E)- or (Z)-Alkene Replaces the Prolyl Peptide Bond.

Authors:  James D Vasta; Amit Choudhary; Katrina H Jensen; Nicholas A McGrath; Ronald T Raines
Journal:  Biochemistry       Date:  2016-12-21       Impact factor: 3.162

6.  n --> pi* Interaction and n)(pi Pauli repulsion are antagonistic for protein stability.

Authors:  Charles E Jakobsche; Amit Choudhary; Scott J Miller; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

7.  Intimate interactions with carbonyl groups: dipole-dipole or n→π*?

Authors:  Kimberli J Kamer; Amit Choudhary; Ronald T Raines
Journal:  J Org Chem       Date:  2012-12-10       Impact factor: 4.354

Review 8.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

9.  Stereoelectronic effects on the transition barrier of polyproline conformational interconversion.

Authors:  Yi-Chun Chiang; Yu-Ju Lin; Jia-Cherng Horng
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

10.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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