Literature DB >> 18339764

Structure and dynamics of the force-generating domain of myosin probed by multifrequency electron paramagnetic resonance.

Yuri E Nesmelov1, Roman V Agafonov, Adam R Burr, Ralph T Weber, David D Thomas.   

Abstract

Spin-labeling and multifrequency EPR spectroscopy were used to probe the dynamic local structure of skeletal myosin in the region of force generation. Subfragment 1 (S1) of rabbit skeletal myosin was labeled with an iodoacetamide spin label at C707 (SH1). X- and W-band EPR spectra were recorded for the apo state and in the presence of ADP and nucleotide analogs. EPR spectra were analyzed in terms of spin-label rotational motion within myosin by fitting them with simulated spectra. Two models were considered: rapid-limit oscillation (spectrum-dependent on the orientational distribution only) and slow restricted motion (spectrum-dependent on the rotational correlation time and the orientational distribution). The global analysis of spectra obtained at two microwave frequencies (9.4 GHz and 94 GHz) produced clear support for the second model and enabled detailed determination of rates and amplitudes of rotational motion and resolution of multiple conformational states. The apo biochemical state is well-described by a single structural state of myosin (M) with very restricted slow motion of the spin label. The ADP-bound biochemical state of myosin also reveals a single structural state (M*, shown previously to be the same as the post-powerstroke ATP-bound state), with less restricted slow motion of the spin label. In contrast, the extra resolution available at 94 GHz reveals that the EPR spectrum of the S1.ADP.V(i)-bound biochemical state of myosin, which presumably mimics the S1.ADP.P(i) state, is resolved clearly into three spectral components (structural states). One state is indistinguishable from that of the ADP-bound state (M*) and is characterized by moderate restriction and slow motion, with a mole fraction of 16%. The remaining 84% (M**) contains two additional components and is characterized by fast rotation about the x axis of the spin label. After analyzing EPR spectra, myosin ATPase activity, and available structural information for myosin II, we conclude that post-powerstroke and pre-powerstroke structural states (M* and M**) coexist in the S1.ADP.V(i) biochemical state. We propose that the pre-powerstroke state M** is characterized by two structural states that could reflect flexibility between the converter and N-terminal domains of myosin.

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Year:  2008        PMID: 18339764      PMCID: PMC2426653          DOI: 10.1529/biophysj.107.124305

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Structural determination of spin label immobilization and orientation: a Monte Carlo minimization approach.

Authors:  Ken Sale; Cecília Sár; Kim A Sharp; Kálmán Hideg; Peter G Fajer
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2.  Molecular dynamics simulation of site-directed spin labeling: experimental validation in muscle fibers.

Authors:  Leslie E W LaConte; Vincent Voelz; Wendy Nelson; Michael Enz; David D Thomas
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

3.  Structural dynamics of actin during active interaction with myosin: different effects of weakly and strongly bound myosin heads.

Authors:  Ewa Prochniewicz; Timothy F Walseth; David D Thomas
Journal:  Biochemistry       Date:  2004-08-24       Impact factor: 3.162

4.  The role of the fast motion of the spin label in the interpretation of EPR spectra for spin-labeled macromolecules.

Authors:  Vladimir P Timofeev; Dmitriy O Nikolsky
Journal:  J Biomol Struct Dyn       Date:  2003-12

5.  Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method.

Authors:  Mikolai I Fajer; Hongzhi Li; Wei Yang; Piotr G Fajer
Journal:  J Am Chem Soc       Date:  2007-10-19       Impact factor: 15.419

6.  Molecular motion of spin labeled side chains in alpha-helices: analysis by variation of side chain structure.

Authors:  L Columbus; T Kálai; J Jekö; K Hideg; W L Hubbell
Journal:  Biochemistry       Date:  2001-04-03       Impact factor: 3.162

Review 7.  Myosin motors: missing structures and hidden springs.

Authors:  A Houdusse; H L Sweeney
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

8.  X-ray structures of the apo and MgATP-bound states of Dictyostelium discoideum myosin motor domain.

Authors:  C B Bauer; H M Holden; J B Thoden; R Smith; I Rayment
Journal:  J Biol Chem       Date:  2000-12-08       Impact factor: 5.157

9.  Analysis of the conformational change of myosin during ATP hydrolysis using fluorescence resonance energy transfer.

Authors:  Yoshiaki Mizukura; Shinsaku Maruta
Journal:  J Biochem       Date:  2002-09       Impact factor: 3.387

10.  Myosin regulatory domain orientation in skeletal muscle fibers: application of novel electron paramagnetic resonance spectral decomposition and molecular modeling methods.

Authors:  Bruce A J Baumann; Hua Liang; Ken Sale; Brett D Hambly; Piotr G Fajer
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

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  12 in total

1.  Stabilization of helical order in the thick filaments by blebbistatin: further evidence of coexisting multiple conformations of myosin.

Authors:  Sengen Xu; Howard D White; Gerald W Offer; Leepo C Yu
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

2.  Continuous wave W- and D-band EPR spectroscopy offer "sweet-spots" for characterizing conformational changes and dynamics in intrinsically disordered proteins.

Authors:  Thomas M Casey; Zhanglong Liu; Jackie M Esquiaqui; Natasha L Pirman; Eugene Milshteyn; Gail E Fanucci
Journal:  Biochem Biophys Res Commun       Date:  2014-06-17       Impact factor: 3.575

3.  Structural kinetics of myosin by transient time-resolved FRET.

Authors:  Yuri E Nesmelov; Roman V Agafonov; Igor V Negrashov; Sarah E Blakely; Margaret A Titus; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

4.  Structural and functional impact of site-directed methionine oxidation in myosin.

Authors:  Jennifer C Klein; Rebecca J Moen; Evan A Smith; Margaret A Titus; David D Thomas
Journal:  Biochemistry       Date:  2011-11-08       Impact factor: 3.162

5.  Protein structural dynamics revealed by site-directed spin labeling and multifrequency EPR.

Authors:  Yuri E Nesmelov; David D Thomas
Journal:  Biophys Rev       Date:  2010-05

6.  Muscle and nonmuscle myosins probed by a spin label at equivalent sites in the force-generating domain.

Authors:  Roman V Agafonov; Yuri E Nesmelov; Margaret A Titus; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-02       Impact factor: 11.205

7.  The structural dynamics of actin during active interaction with myosin depends on the isoform of the essential light chain.

Authors:  Ewa Prochniewicz; Piyali Guhathakurta; David D Thomas
Journal:  Biochemistry       Date:  2013-02-15       Impact factor: 3.162

Review 8.  Use of electron paramagnetic resonance to solve biochemical problems.

Authors:  Indra D Sahu; Robert M McCarrick; Gary A Lorigan
Journal:  Biochemistry       Date:  2013-08-20       Impact factor: 3.162

9.  Actin-binding cleft closure in myosin II probed by site-directed spin labeling and pulsed EPR.

Authors:  Jennifer C Klein; Adam R Burr; Bengt Svensson; Daniel J Kennedy; John Allingham; Margaret A Titus; Ivan Rayment; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-25       Impact factor: 11.205

Review 10.  Site-directed spectroscopic probes of actomyosin structural dynamics.

Authors:  David D Thomas; David Kast; Vicci L Korman
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

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