Literature DB >> 18338224

Predicting allergic contact dermatitis: a hierarchical structure-activity relationship (SAR) approach to chemical classification using topological and quantum chemical descriptors.

Subhash C Basak1, Denise Mills, Douglas M Hawkins.   

Abstract

A hierarchical classification study was carried out based on a set of 70 chemicals-35 which produce allergic contact dermatitis (ACD) and 35 which do not. This approach was implemented using a regular ridge regression computer code, followed by conversion of regression output to binary data values. The hierarchical descriptor classes used in the modeling include topostructural (TS), topochemical (TC), and quantum chemical (QC), all of which are based solely on chemical structure. The concordance, sensitivity, and specificity are reported. The model based on the TC descriptors was found to be the best, while the TS model was extremely poor.

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Year:  2008        PMID: 18338224     DOI: 10.1007/s10822-008-9202-y

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  7 in total

1.  QSAR with few compounds and many features.

Authors:  D M Hawkins; S C Basak; X Shi
Journal:  J Chem Inf Comput Sci       Date:  2001 May-Jun

2.  Assessing model fit by cross-validation.

Authors:  Douglas M Hawkins; Subhash C Basak; Denise Mills
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

3.  Prediction of tissue: air partition coefficients--theoretical vs. experimental methods.

Authors:  S C Basak; D Mills; B D Gute
Journal:  SAR QSAR Environ Res       Date:  2006-10       Impact factor: 3.000

4.  Multivariate QSAR analysis of a skin sensitization database.

Authors:  M T Cronin; D A Basketter
Journal:  SAR QSAR Environ Res       Date:  1994       Impact factor: 3.000

5.  Structure activity relationships in skin sensitization using the murine local lymph node assay.

Authors:  J Ashby; D A Basketter; D Paton; I Kimber
Journal:  Toxicology       Date:  1995-12-10       Impact factor: 4.221

6.  Prediction of human blood: air partition coefficient: a comparison of structure-based and property-based methods.

Authors:  Subhash C Basak; Denise Mills; Douglas M Hawkins; Hisham A El-Masri
Journal:  Risk Anal       Date:  2003-12       Impact factor: 4.000

7.  Relationship between allergic contact dermatitis and electrophilicity.

Authors:  H S Rosenkranz; G Klopman; Y P Zhang; C Graham; M H Karol
Journal:  Environ Health Perspect       Date:  1999-02       Impact factor: 9.031

  7 in total
  2 in total

1.  Theoretical studies on pyrimidine substituent derivatives as dual inhibitors of AP-1 and NF-kappaB.

Authors:  Li Qian; Si-Yan Liao; Zu-Liang Huang; Yong Shen; Kang-Cheng Zheng
Journal:  J Mol Model       Date:  2009-11-27       Impact factor: 1.810

2.  Prediction of inhibitory activity of epidermal growth factor receptor inhibitors using grid search-projection pursuit regression method.

Authors:  Hongying Du; Zhide Hu; Andrea Bazzoli; Yang Zhang
Journal:  PLoS One       Date:  2011-07-21       Impact factor: 3.240

  2 in total

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