Literature DB >> 18330983

Probing variable amine/amide ligation in Ni(II)N2S2 complexes using sulfur K-edge and nickel L-edge X-ray absorption spectroscopies: implications for the active site of nickel superoxide dismutase.

Jason Shearer1, Ahmad Dehestani, Franklin Abanda.   

Abstract

Nickel superoxide dismutase (NiSOD) is a recently discovered metalloenzyme that catalyzes the disproportionation of O2(*-) into O2 and H2O2. In its reduced state, the mononuclear Ni(II) ion is ligated by two cis-cysteinate sulfurs, an amine nitrogen (from the protein N-terminus), and an amide nitrogen (from the peptide backbone). Unlike many small molecule and metallopeptide-based NiN2S2 complexes, S-based oxygenation is not observed in NiSOD. Herein we explore the spectroscopic properties of a series of three Ni(II)N2S2 complexes (bisamine-ligated (bmmp-dmed)Ni(II), amine/amide-ligated (Ni(II)(BEAAM))(-), and bisamide-ligated (Ni(II)(emi))(2-)) with varying amine/amide ligation to determine the origin of the dioxygen stability of NiSOD. Ni L-edge X-ray absorption spectroscopy (XAS) demonstrates that there is a progression in ligand-field strength with (bmmp-dmed)Ni(II) having the weakest ligand field and (Ni(II)(emi))(2-)) having the strongest ligand field. Furthermore, these Ni L-edge XAS studies also show that all three complexes are highly covalent with (Ni(II)(BEEAM))(-) having the highest degree of metal-ligand covalency of the three compounds studied. S K-edge XAS also shows a high degree of Ni-S covalency in all three complexes. The electronic structures of the three complexes were probed using both hybrid-DFT and multiconfigurational SORCI calculations. These calculations demonstrate that the nucleophilic Ni(3d)/S(pi)* HOMO of these NiN2S2 complexes progressively decreases in energy as the amide-nitrogens are replaced with amine nitrogens. This decrease in energy of the HOMO deactivates the Ni-center toward O2 reactivity. Thus, the Ni-S bond is protected from S-based oxygenation explaining the enhanced stability of the NiSOD active-site toward oxygenation by dioxygen.

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Year:  2008        PMID: 18330983     DOI: 10.1021/ic7019878

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  12 in total

1.  Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization.

Authors:  Eric M Gale; Darin M Cowart; Robert A Scott; Todd C Harrop
Journal:  Inorg Chem       Date:  2011-09-20       Impact factor: 5.165

2.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

3.  Accessing Ni(III)-thiolate versus Ni(II)-thiyl bonding in a family of Ni-N2S2 synthetic models of NiSOD.

Authors:  Ellen P Broering; Stephanie Dillon; Eric M Gale; Ramsey A Steiner; Joshua Telser; Thomas C Brunold; Todd C Harrop
Journal:  Inorg Chem       Date:  2015-04-02       Impact factor: 5.165

4.  Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.

Authors:  Olivia E Johnson; Kelly C Ryan; Michael J Maroney; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2010-03-24       Impact factor: 3.358

5.  MAPping the chiral inversion and structural transformation of a metal-tripeptide complex having ni-superoxide dismutase activity.

Authors:  Mary E Krause; Amanda M Glass; Timothy A Jackson; Jennifer S Laurence
Journal:  Inorg Chem       Date:  2011-01-31       Impact factor: 5.165

6.  Influence of sequential guanidinium methylation on the energetics of the guanidinium...guanine dimer and guanidinium...guanine...cytosine trimer: implications for the control of protein...DNA interactions by arginine methyltransferases.

Authors:  Jason Shearer
Journal:  J Phys Chem B       Date:  2008-12-25       Impact factor: 2.991

Review 7.  X-ray absorption spectroscopy of dinuclear metallohydrolases.

Authors:  David L Tierney; Gerhard Schenk
Journal:  Biophys J       Date:  2014-09-16       Impact factor: 4.033

8.  Sequential oxidations of thiolates and the cobalt metallocenter in a synthetic metallopeptide: implications for the biosynthesis of nitrile hydratase.

Authors:  Arnab Dutta; Marco Flores; Souvik Roy; Jennifer C Schmitt; G Alexander Hamilton; Hilairy E Hartnett; Jason M Shearer; Anne K Jones
Journal:  Inorg Chem       Date:  2013-04-15       Impact factor: 5.165

9.  The Role of Mixed Amine/Amide Ligation in Nickel Superoxide Dismutase.

Authors:  Hsin-Ting Huang; Stephanie Dillon; Kelly C Ryan; Julius O Campecino; Olivia E Watkins; Diane E Cabelli; Thomas C Brunold; Michael J Maroney
Journal:  Inorg Chem       Date:  2018-10-03       Impact factor: 5.165

10.  Imidazole-containing (N3S)-Ni(II) complexes relating to nickel containing biomolecules.

Authors:  Roxanne M Jenkins; Michael L Singleton; Elky Almaraz; Joseph H Reibenspies; Marcetta Y Darensbourg
Journal:  Inorg Chem       Date:  2009-08-03       Impact factor: 5.165

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