Literature DB >> 18323606

Crystallization and preliminary X-ray crystallographic characterization of TrmFO, a folate-dependent tRNA methyltransferase from Thermotoga maritima.

Nenad Cicmil1.   

Abstract

TrmFO, previously classified as GID, is a methyltransferase that catalyzes the formation of 5-methyluridine or ribothymidine (T) at position 54 in tRNA in some Gram-positive bacteria. To date, TrmFO is the only characterized tRNA methyltransferase that does not use S-adenosylmethionine as the methyl-group donor. Instead, the donor of the methyl group is N(5),N(10)-methylenetetrahydrofolate. The crystallization and preliminary X-ray crystallographic studies of TrmFO are reported here. The recombinant protein, cloned from Thermotoga maritima genomic DNA, was overproduced in Esherichia coli and crystallized in 25%(v/v) PEG 4000, 100 mM NaCl and sodium citrate buffer pH 5.0 at 291 K using the hanging-drop vapor-diffusion method. The plate-shaped crystals diffracted to 2.6 A and belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 79.94, b = 92.46, c = 127.20 A.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18323606      PMCID: PMC2374164          DOI: 10.1107/S1744309108003825

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

Review 1.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

2.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; C Horn; M Brown; A Ioudovitch; S Steinberg
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 4.  Transfer RNA modification.

Authors:  G R Björk; J U Ericson; C E Gustafsson; T G Hagervall; Y H Jönsson; P M Wikström
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

5.  Overproduction of proteins using expression-cassette polymerase chain reaction.

Authors:  K D MacFerrin; L Chen; M P Terranova; S L Schreiber; G L Verdine
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

6.  Stereochemistry of methyl transfer catalyzed by tRNA (m5U54)-methyltransferase--evidence for a single displacement mechanism.

Authors:  J T Kealey; S Lee; H G Floss; D V Santi
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

7.  Methylenetetrahydrofolate-dependent biosynthesis of ribothymidine in transfer RNA of Streptococcus faecalis. Evidence for reduction of the 1-carbon unit by FADH2.

Authors:  A S Delk; D P Nagle; J C Rabinowitz
Journal:  J Biol Chem       Date:  1980-05-25       Impact factor: 5.157

8.  Crystallization and preliminary X-ray crystallographic studies of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8.

Authors:  Wakana Iwasaki; Hideyuki Miyatake; Akio Ebihara; Kunio Miki
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

9.  Initiation of protein synthesis by folate-sufficient and folate-deficient Streptococcus faecalis R: partial purification and properties of methionyl-transfer ribonucleic acid synthetase and methionyl-transfer ribonucleic acid formyltransferase.

Authors:  C E Samuel; J C Rabinowitz
Journal:  J Bacteriol       Date:  1974-04       Impact factor: 3.490

10.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

View more
  4 in total

1.  NMR solution structure of poliovirus uridylyated peptide linked to the genome (VPgpU).

Authors:  Catherine H Schein; Numan Oezguen; Gerbrand J van der Heden van Noort; Dmitri V Filippov; Aniko Paul; Eric Kumar; Werner Braun
Journal:  Peptides       Date:  2010-05-02       Impact factor: 3.750

2.  Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase.

Authors:  Hiroshi Nishimasu; Ryuichiro Ishitani; Koki Yamashita; Chikako Iwashita; Akira Hirata; Hiroyuki Hori; Osamu Nureki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-05       Impact factor: 11.205

Review 3.  Utility of the Biosynthetic Folate Pathway for Targets in Antimicrobial Discovery.

Authors:  Christina R Bourne
Journal:  Antibiotics (Basel)       Date:  2014-01-21

Review 4.  Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.

Authors:  Hiroyuki Hori; Takuya Kawamura; Takako Awai; Anna Ochi; Ryota Yamagami; Chie Tomikawa; Akira Hirata
Journal:  Microorganisms       Date:  2018-10-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.