Literature DB >> 18320606

Applying rapid genome sequencing technologies to characterize pathogen genomes.

Karyn Meltz Steinberg1, David T Okou, Michael E Zwick.   

Abstract

Mesh:

Year:  2008        PMID: 18320606      PMCID: PMC5628356          DOI: 10.1021/ac086027z

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


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  43 in total

1.  High-throughput variation detection and genotyping using microarrays.

Authors:  D J Cutler; M E Zwick; M M Carrasquillo; C T Yohn; K P Tobin; C Kashuk; D J Mathews; N A Shah; E E Eichler; J A Warrington; A Chakravarti
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

2.  Rapid molecular identification and subtyping of Helicobacter pylori by pyrosequencing of the 16S rDNA variable V1 and V3 regions.

Authors:  H Monstein; S Nikpour-Badr; J Jonasson
Journal:  FEMS Microbiol Lett       Date:  2001-05-15       Impact factor: 2.742

3.  Light-directed 5'-->3' synthesis of complex oligonucleotide microarrays.

Authors:  Thomas J Albert; Jason Norton; Markus Ott; Todd Richmond; Kate Nuwaysir; Emile F Nuwaysir; Klaus-Peter Stengele; Roland D Green
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

Review 4.  Advances in sequencing technology.

Authors:  Eugene Y Chan
Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

5.  Using a resequencing microarray as a multiple respiratory pathogen detection assay.

Authors:  Baochuan Lin; Kate M Blaney; Anthony P Malanoski; Adam G Ligler; Joel M Schnur; David Metzgar; Kevin L Russell; David A Stenger
Journal:  J Clin Microbiol       Date:  2006-11-29       Impact factor: 5.948

6.  A sequencing method based on real-time pyrophosphate.

Authors:  M Ronaghi; M Uhlén; P Nyrén
Journal:  Science       Date:  1998-07-17       Impact factor: 47.728

7.  Use of resequencing oligonucleotide microarrays for identification of Streptococcus pyogenes and associated antibiotic resistance determinants.

Authors:  Louis Davignon; Elizabeth A Walter; Kate M Mueller; Christopher P Barrozo; David A Stenger; Baochuan Lin
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

8.  Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors:  H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

Review 9.  Microbial disease in humans: A genomic perspective.

Authors:  G Subramanian; R Mural; S L Hoffman; J C Venter; S Broder
Journal:  Mol Diagn       Date:  2001-12

10.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

Authors:  Timothy D Read; Scott N Peterson; Nicolas Tourasse; Les W Baillie; Ian T Paulsen; Karen E Nelson; Hervé Tettelin; Derrick E Fouts; Jonathan A Eisen; Steven R Gill; Erik K Holtzapple; Ole Andreas Okstad; Erlendur Helgason; Jennifer Rilstone; Martin Wu; James F Kolonay; Maureen J Beanan; Robert J Dodson; Lauren M Brinkac; Michelle Gwinn; Robert T DeBoy; Ramana Madpu; Sean C Daugherty; A Scott Durkin; Daniel H Haft; William C Nelson; Jeremy D Peterson; Mihai Pop; Hoda M Khouri; Diana Radune; Jonathan L Benton; Yasmin Mahamoud; Lingxia Jiang; Ioana R Hance; Janice F Weidman; Kristi J Berry; Roger D Plaut; Alex M Wolf; Kisha L Watkins; William C Nierman; Alyson Hazen; Robin Cline; Caroline Redmond; Joanne E Thwaite; Owen White; Steven L Salzberg; Brendan Thomason; Arthur M Friedlander; Theresa M Koehler; Philip C Hanna; Anne-Brit Kolstø; Claire M Fraser
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

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  2 in total

Review 1.  Application of 'next-generation' sequencing technologies to microbial genetics.

Authors:  Daniel MacLean; Jonathan D G Jones; David J Studholme
Journal:  Nat Rev Microbiol       Date:  2009-04       Impact factor: 60.633

2.  Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing.

Authors:  Peter E Chen; Kristin M Willner; Amy Butani; Shakia Dorsey; Matroner George; Andrew Stewart; Shannon M Lentz; Christopher E Cook; Arya Akmal; Lance B Price; Paul S Keim; Alfred Mateczun; Trupti N Brahmbhatt; Kimberly A Bishop-Lilly; Michael E Zwick; Timothy D Read; Shanmuga Sozhamannan
Journal:  PLoS One       Date:  2010-08-25       Impact factor: 3.240

  2 in total

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