Literature DB >> 18309367

Brachypodium genomics.

Bahar Sogutmaz Ozdemir1, Pilar Hernandez, Ertugrul Filiz, Hikmet Budak.   

Abstract

Brachypodium distachyon (L.) Beauv. is a temperate wild grass species; its morphological and genomic characteristics make it a model system when compared to many other grass species. It has a small genome, short growth cycle, self-fertility, many diploid accessions, and simple growth requirements. In addition, it is phylogenetically close to economically important crops, like wheat and barley, and several potential biofuel grasses. It exhibits agricultural traits similar to those of these target crops. For cereal genomes, it is a better model than Arabidopsis thaliana and Oryza sativa (rice), the former used as a model for all flowering plants and the latter hitherto used as model for genomes of all temperate grass species including major cereals like barley and wheat. Increasing interest in this species has resulted in the development of a series of genomics resources, including nuclear sequences and BAC/EST libraries, together with the collection and characterization of other genetic resources. It is expected that the use of this model will allow rapid advances in generation of genomics information for the improvement of all temperate crops, particularly the cereals.

Entities:  

Year:  2008        PMID: 18309367      PMCID: PMC2246064          DOI: 10.1155/2008/536104

Source DB:  PubMed          Journal:  Int J Plant Genomics        ISSN: 1687-5389


  17 in total

1.  Evolutionary history of the grasses.

Authors:  E A Kellogg
Journal:  Plant Physiol       Date:  2001-03       Impact factor: 8.340

2.  Metabolomic approaches reveal that phosphatidic and phosphatidyl glycerol phospholipids are major discriminatory non-polar metabolites in responses by Brachypodium distachyon to challenge by Magnaporthe grisea.

Authors:  J William Allwood; David I Ellis; Jim K Heald; Royston Goodacre; Luis A J Mur
Journal:  Plant J       Date:  2006-05       Impact factor: 6.417

3.  Laying the cytotaxonomic foundations of a new model grass, Brachypodium distachyon (L.) Beauv.

Authors:  Robert Hasterok; John Draper; Glyn Jenkins
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

Review 4.  Nuclear DNA amounts in angiosperms: progress, problems and prospects.

Authors:  M D Bennett; I J Leitch
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

5.  Brachypodium distachyon. A new model system for functional genomics in grasses.

Authors:  J Draper; L A Mur; G Jenkins; G C Ghosh-Biswas; P Bablak; R Hasterok; A P Routledge
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

6.  A rapid and efficient transformation protocol for the grass Brachypodium distachyon.

Authors:  Pernille Christiansen; Claus Henrik Andersen; Thomas Didion; Marianne Folling; Klaus Kristian Nielsen
Journal:  Plant Cell Rep       Date:  2004-10-19       Impact factor: 4.570

7.  Individual DNA bands obtained by RAPD analysis of canine genomic DNA often contain multiple DNA sequences.

Authors:  W Gu; C M Post; G D Aguirre; K Ray
Journal:  J Hered       Date:  1999 Jan-Feb       Impact factor: 2.645

8.  The map-based sequence of the rice genome.

Authors: 
Journal:  Nature       Date:  2005-08-11       Impact factor: 49.962

9.  Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content.

Authors:  Tracie N Foote; Simon Griffiths; Sebastien Allouis; Graham Moore
Journal:  Funct Integr Genomics       Date:  2004-01-16       Impact factor: 3.410

10.  Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization.

Authors:  Robert Hasterok; Agnieszka Marasek; Iain S Donnison; Ian Armstead; Ann Thomas; Ian P King; Elzbieta Wolny; Dominika Idziak; John Draper; Glyn Jenkins
Journal:  Genetics       Date:  2006-02-19       Impact factor: 4.562

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  21 in total

1.  Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization.

Authors:  John Harper; Ian Armstead; Ann Thomas; Caron James; Dagmara Gasior; Maciej Bisaga; Luned Roberts; Ian King; Julie King
Journal:  Ann Bot       Date:  2011-04-12       Impact factor: 4.357

2.  Comparative transcriptome analysis provides key insights into gene expression pattern during the formation of nodule-like structures in Brachypodium.

Authors:  Jacklyn Thomas; Megan J Bowman; Andres Vega; Ha Ram Kim; Arijit Mukherjee
Journal:  Funct Integr Genomics       Date:  2018-03-06       Impact factor: 3.410

3.  Identification, characterization, and expression analysis of auxin response factor (ARF) gene family in Brachypodium distachyon.

Authors:  Xiaojian Zhou; Xiaozhu Wu; Tongjian Li; Mingliang Jia; Xinshen Liu; Yulan Zou; Zixia Liu; Feng Wen
Journal:  Funct Integr Genomics       Date:  2018-06-20       Impact factor: 3.410

4.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Authors:  Keiichi Mochida; Takuhiro Yoshida; Tetsuya Sakurai; Yasunari Ogihara; Kazuo Shinozaki
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

5.  Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.

Authors:  Naxin Huo; John P Vogel; Gerard R Lazo; Frank M You; Yaqin Ma; Stephanie McMahon; Jan Dvorak; Olin D Anderson; Ming-Cheng Luo; Yong Q Gu
Journal:  Plant Mol Biol       Date:  2009-01-29       Impact factor: 4.076

6.  Duplication of a well-conserved homeodomain-leucine zipper transcription factor gene in barley generates a copy with more specific functions.

Authors:  Shun Sakuma; Mohammad Pourkheirandish; Takashi Matsumoto; Takato Koba; Takao Komatsuda
Journal:  Funct Integr Genomics       Date:  2009-08-26       Impact factor: 3.410

7.  Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon.

Authors:  John P Vogel; Metin Tuna; Hikmet Budak; Naxin Huo; Yong Q Gu; Michael A Steinwand
Journal:  BMC Plant Biol       Date:  2009-07-13       Impact factor: 4.215

8.  Conserved microRNAs and their targets in model grass species Brachypodium distachyon.

Authors:  Turgay Unver; Hikmet Budak
Journal:  Planta       Date:  2009-07-08       Impact factor: 4.116

9.  Molecular characterisation and evolution of HMW glutenin subunit genes in Brachypodium distachyon L.

Authors:  Saminathan Subburaj; Guanxing Chen; Caixia Han; Dongwen Lv; Xiaohui Li; Friedrich J Zeller; Sai L K Hsam; Yueming Yan
Journal:  J Appl Genet       Date:  2013-12-04       Impact factor: 3.240

10.  A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Authors:  Yong Q Gu; Yaqin Ma; Naxin Huo; John P Vogel; Frank M You; Gerard R Lazo; William M Nelson; Carol Soderlund; Jan Dvorak; Olin D Anderson; Ming-Cheng Luo
Journal:  BMC Genomics       Date:  2009-10-27       Impact factor: 3.969

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