Literature DB >> 18308362

Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota.

Mart Krupovic1, Dennis H Bamford.   

Abstract

The viral lineage hypothesis predicting a common origin for viruses that infect hosts residing in different domains of life gains more support as data on viral structures accumulates. One such lineage is the PRD1-adenovirus lineage, which unites icosahedral dsDNA viruses with large facets and a double beta-barrel trimer coat protein. This lineage is represented by a number of viruses infecting bacteria and eukaryotes. However, only one member of the lineage, Sulfolobus turreted icosahedral virus, infecting a crenarchaeal host, has been identified in the domain Archaea. In this study we characterize the genomic sequences of two archaeal proviruses, TKV4 and MVV, integrated into the 5'- and 3'-distal regions of tRNA genes of the euryarchaeal species Thermococcus kodakaraensis KOD1 and Methanococcus voltae A3, respectively. Bioinformatic approaches allowed placement of TKV4 and MVV into the PRD1-adenovirus lineage, thus extending the lineage to the second archaeal phylum, Euryarchaeota.

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Year:  2008        PMID: 18308362     DOI: 10.1016/j.virol.2008.01.043

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  34 in total

1.  Unification of the globally distributed spindle-shaped viruses of the Archaea.

Authors:  Mart Krupovic; Emmanuelle R J Quemin; Dennis H Bamford; Patrick Forterre; David Prangishvili
Journal:  J Virol       Date:  2013-12-11       Impact factor: 5.103

Review 2.  How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions.

Authors:  Marleen van Wolferen; Małgorzata Ajon; Arnold J M Driessen; Sonja-Verena Albers
Journal:  Extremophiles       Date:  2013-05-28       Impact factor: 2.395

3.  Transfer RNA genes in pieces.

Authors:  Lennart Randau; Dieter Söll
Journal:  EMBO Rep       Date:  2008-06-13       Impact factor: 8.807

Review 4.  The LUCA and its complex virome.

Authors:  Mart Krupovic; Valerian V Dolja; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2020-07-14       Impact factor: 60.633

Review 5.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

6.  Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains.

Authors:  Katrin Weidenbach; Lisa Nickel; Horst Neve; Omer S Alkhnbashi; Sven Künzel; Anne Kupczok; Thorsten Bauersachs; Liam Cassidy; Andreas Tholey; Rolf Backofen; Ruth A Schmitz
Journal:  J Virol       Date:  2017-10-27       Impact factor: 5.103

Review 7.  Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Authors:  Mart Krupovic; David Prangishvili; Roger W Hendrix; Dennis H Bamford
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

8.  Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis.

Authors:  Kenta Tagashira; Wakao Fukuda; Masaaki Matsubara; Tamotsu Kanai; Haruyuki Atomi; Tadayuki Imanaka
Journal:  Extremophiles       Date:  2012-12-09       Impact factor: 2.395

9.  Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1.

Authors:  Aurore Gorlas; Mart Krupovic; Patrick Forterre; Claire Geslin
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

10.  Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins.

Authors:  Nicolas Soler; Evelyne Marguet; Diego Cortez; Nicole Desnoues; Jenny Keller; Herman van Tilbeurgh; Guennadi Sezonov; Patrick Forterre
Journal:  Nucleic Acids Res       Date:  2010-04-18       Impact factor: 16.971

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