Literature DB >> 18304575

Miscoding properties of 2'-deoxyinosine, a nitric oxide-derived DNA Adduct, during translesion synthesis catalyzed by human DNA polymerases.

Manabu Yasui1, Emi Suenaga, Naoki Koyama, Chikahide Masutani, Fumio Hanaoka, Petr Gruz, Shinya Shibutani, Takehiko Nohmi, Makoto Hayashi, Masamitsu Honma.   

Abstract

Chronic inflammation involving constant generation of nitric oxide (*NO) by macrophages has been recognized as a factor related to carcinogenesis. At the site of inflammation, nitrosatively deaminated DNA adducts such as 2'-deoxyinosine (dI) and 2'-deoxyxanthosine are primarily formed by *NO and may be associated with the development of cancer. In this study, we explored the miscoding properties of the dI lesion generated by Y-family DNA polymerases (pols) using a new fluorescent method for analyzing translesion synthesis. An oligodeoxynucleotide containing a single dI lesion was used as a template in primer extension reaction catalyzed by human DNA pols to explore the miscoding potential of the dI adduct. Primer extension reaction catalyzed by pol alpha was slightly retarded prior to the dI adduct site; most of the primers were extended past the lesion. Pol eta and pol kappaDeltaC (a truncated form of pol kappa) readily bypassed the dI lesion. The fully extended products were analyzed by using two-phased PAGE to quantify the miscoding frequency and specificity occurring at the lesion site. All pols, that is, pol alpha, pol eta, and pol kappaDeltaC, promoted preferential incorporation of 2'-deoxycytidine monophosphate (dCMP), the wrong base, opposite the dI lesion. Surprisingly, no incorporation of 2'-deoxythymidine monophosphate, the correct base, was observed opposite the lesion. Steady-state kinetic studies with pol alpha, pol eta, and pol kappaDeltaC indicated that dCMP was preferentially incorporated opposite the dI lesion. These pols bypassed the lesion by incorporating dCMP opposite the lesion and extended past the lesion. These relative bypass frequencies past the dC:dI pair were at least 3 orders of magnitude higher than those for the dT:dI pair. Thus, the dI adduct is a highly miscoding lesion capable of generating A-->G transition. This ()NO-induced adduct may play an important role in initiating inflammation-driven carcinogenesis.

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Year:  2008        PMID: 18304575     DOI: 10.1016/j.jmb.2008.01.033

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  29 in total

1.  Defects in purine nucleotide metabolism lead to substantial incorporation of xanthine and hypoxanthine into DNA and RNA.

Authors:  Bo Pang; Jose L McFaline; Nicholas E Burgis; Min Dong; Koli Taghizadeh; Matthew R Sullivan; C Eric Elmquist; Richard P Cunningham; Peter C Dedon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Genome, Epigenome, and Transcriptome Editing via Chemical Modification of Nucleobases in Living Cells.

Authors:  Brodie L Ranzau; Alexis C Komor
Journal:  Biochemistry       Date:  2018-12-12       Impact factor: 3.162

3.  Kinetic analysis of base-pairing preference for nucleotide incorporation opposite template pyrimidines by human DNA polymerase iota.

Authors:  Jeong-Yun Choi; Seonhee Lim; Robert L Eoff; F Peter Guengerich
Journal:  J Mol Biol       Date:  2009-04-17       Impact factor: 5.469

4.  Mutagenic potential of hypoxanthine in live human cells.

Authors:  Stephen DeVito; Jordan Woodrick; Linze Song; Rabindra Roy
Journal:  Mutat Res       Date:  2017-06-28       Impact factor: 2.433

5.  Role of the 2-amino group of purines during dNTP polymerization by human DNA polymerase alpha.

Authors:  Jennifer N Patro; Milan Urban; Robert D Kuchta
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

6.  Impact of Ribonucleotide Backbone on Translesion Synthesis and Repair of 7,8-Dihydro-8-oxoguanine.

Authors:  Akira Sassa; Melike Çağlayan; Yesenia Rodriguez; William A Beard; Samuel H Wilson; Takehiko Nohmi; Masamitsu Honma; Manabu Yasui
Journal:  J Biol Chem       Date:  2016-09-22       Impact factor: 5.157

7.  Regulation of Human Endonuclease V Activity and Relocalization to Cytoplasmic Stress Granules.

Authors:  Meh Sameen Nawaz; Erik Sebastian Vik; Natalia Berges; Cathrine Fladeby; Magnar Bjørås; Bjørn Dalhus; Ingrun Alseth
Journal:  J Biol Chem       Date:  2016-08-29       Impact factor: 5.157

8.  Steric and electrostatic effects at the C2 atom substituent influence replication and miscoding of the DNA deamination product deoxyxanthosine and analogs by DNA polymerases.

Authors:  Huidong Zhang; Urban Bren; Ivan D Kozekov; Carmelo J Rizzo; Donald F Stec; F Peter Guengerich
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469

9.  NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest.

Authors:  Teruaki Iyama; Nona Abolhassani; Daisuke Tsuchimoto; Mari Nonaka; Yusaku Nakabeppu
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

10.  Efficient recognition of an unpaired lesion by a DNA repair glycosylase.

Authors:  Derek M Lyons; Patrick J O'Brien
Journal:  J Am Chem Soc       Date:  2009-12-16       Impact factor: 15.419

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