Literature DB >> 18295532

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants.

Colin Cavanagh1, Matthew Morell, Ian Mackay, Wayne Powell.   

Abstract

The dissection of gene-trait associations and its translation into practice through plant breeding is a central aspect of modern plant biology. The identification of genes underlying simply inherited traits has been very successful. However, the identification of gene-trait associations for complex (multi-genic) traits in crop plants with large, often polyploid genomes has been limited by the absence of appropriate genetic resources that allow quantitative trait loci (QTL) and causal genes to be identified and localised. There has also been a tendency for genetic resources to be developed in germplasm not directly relevant to the breeding community limiting effective implementation. In this review, we discuss approaches to mapping genes and the development of Multi-parent Advanced Generation Inter-cross (MAGIC) populations derived from breeder-relevant germplasm as a platform for a new generation of gene-trait analysis in crop species.

Mesh:

Year:  2008        PMID: 18295532     DOI: 10.1016/j.pbi.2008.01.002

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  137 in total

Review 1.  Multiparent intercross populations in analysis of quantitative traits.

Authors:  Sujay Rakshit; Arunita Rakshit; J V Patil
Journal:  J Genet       Date:  2012       Impact factor: 1.166

2.  Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012.

Authors:  R Appels; R Barrero; M Bellgard
Journal:  Funct Integr Genomics       Date:  2012-02-22       Impact factor: 3.410

3.  QTL detection power of multi-parental RIL populations in Arabidopsis thaliana.

Authors:  J R Klasen; H-P Piepho; B Stich
Journal:  Heredity (Edinb)       Date:  2012-02-15       Impact factor: 3.821

4.  Sponge and dough bread making: genetic and phenotypic relationships with wheat quality traits.

Authors:  Colin R Cavanagh; Julian Taylor; Oscar Larroque; Neil Coombes; Arunas P Verbyla; Zena Nath; Ibrahim Kutty; Lynette Rampling; Barbara Butow; Jean-Philippe Ral; Sandor Tomoskozi; Gabor Balazs; Ferenc Békés; Gulay Mann; Ken J Quail; Michael Southan; Matthew K Morell; Marcus Newberry
Journal:  Theor Appl Genet       Date:  2010-05-22       Impact factor: 5.699

5.  Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data.

Authors:  Christopher A Fragoso; Christopher Heffelfinger; Hongyu Zhao; Stephen L Dellaporta
Journal:  Genetics       Date:  2015-12-29       Impact factor: 4.562

6.  Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium.

Authors:  Pascal Schopp; Dominik Müller; Frank Technow; Albrecht E Melchinger
Journal:  Genetics       Date:  2016-11-09       Impact factor: 4.562

7.  Association mapping for frost tolerance using multi-parent advanced generation inter-cross (MAGIC) population in faba bean (Vicia faba L.).

Authors:  Ahmed Sallam; Regina Martsch
Journal:  Genetica       Date:  2015-06-04       Impact factor: 1.082

Review 8.  MAGIC populations in crops: current status and future prospects.

Authors:  B Emma Huang; Klara L Verbyla; Arunas P Verbyla; Chitra Raghavan; Vikas K Singh; Pooran Gaur; Hei Leung; Rajeev K Varshney; Colin R Cavanagh
Journal:  Theor Appl Genet       Date:  2015-04-09       Impact factor: 5.699

Review 9.  Genetics- and genomics-based interventions for nutritional enhancement of grain legume crops: status and outlook.

Authors:  Abhishek Bohra; Kanwar L Sahrawat; Shiv Kumar; Rohit Joshi; Ashok K Parihar; Ummed Singh; Deepak Singh; Narendra P Singh
Journal:  J Appl Genet       Date:  2015-01-16       Impact factor: 3.240

Review 10.  Sequencing consolidates molecular markers with plant breeding practice.

Authors:  Huaan Yang; Chengdao Li; Hon-Ming Lam; Jonathan Clements; Guijun Yan; Shancen Zhao
Journal:  Theor Appl Genet       Date:  2015-03-28       Impact factor: 5.699

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