Literature DB >> 18295475

A glimpse into the epigenetic landscape of gene regulation.

Jane Mellor1, Peter Dudek, David Clynes.   

Abstract

Post-translational modifications to histone proteins and methylation of DNA comprise the epigenome of a cell. The epigenome, which changes through development, controls access to our genes. Recent advances in DNA sequencing technology has led to genome-wide distribution data for a limited number of histone modifications in mammalian stem cells and some differentiated lineages. These studies reveal predictive correlations between histone modifications, different classes of gene and chromosomal features. Moreover, this glimpse into our epigenome challenges current ideas about regulation of gene expression. Many genes in stem cells are poised for expression with initiated RNA polymerase II at the promoter. This state is maintained by an epigenetic mark through multiple lineages until the gene is expressed.

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Year:  2008        PMID: 18295475     DOI: 10.1016/j.gde.2007.12.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  36 in total

1.  A unique H3K4me2 profile marks tissue-specific gene regulation.

Authors:  Aleksandra Pekowska; Touati Benoukraf; Pierre Ferrier; Salvatore Spicuglia
Journal:  Genome Res       Date:  2010-09-14       Impact factor: 9.043

2.  Tiny RNAs associated with transcription start sites in animals.

Authors:  Ryan J Taft; Evgeny A Glazov; Nicole Cloonan; Cas Simons; Stuart Stephen; Geoffrey J Faulkner; Timo Lassmann; Alistair R R Forrest; Sean M Grimmond; Kate Schroder; Katharine Irvine; Takahiro Arakawa; Mari Nakamura; Atsutaka Kubosaki; Kengo Hayashida; Chika Kawazu; Mitsuyoshi Murata; Hiromi Nishiyori; Shiro Fukuda; Jun Kawai; Carsten O Daub; David A Hume; Harukazu Suzuki; Valerio Orlando; Piero Carninci; Yoshihide Hayashizaki; John S Mattick
Journal:  Nat Genet       Date:  2009-04-19       Impact factor: 38.330

3.  Ectopic activation of germline and placental genes identifies aggressive metastasis-prone lung cancers.

Authors:  Sophie Rousseaux; Alexandra Debernardi; Baptiste Jacquiau; Anne-Laure Vitte; Aurélien Vesin; Hélène Nagy-Mignotte; Denis Moro-Sibilot; Pierre-Yves Brichon; Sylvie Lantuejoul; Pierre Hainaut; Julien Laffaire; Aurélien de Reyniès; David G Beer; Jean-François Timsit; Christian Brambilla; Elisabeth Brambilla; Saadi Khochbin
Journal:  Sci Transl Med       Date:  2013-05-22       Impact factor: 17.956

Review 4.  Transcriptional control of the TNF gene.

Authors:  James V Falvo; Alla V Tsytsykova; Anne E Goldfeld
Journal:  Curr Dir Autoimmun       Date:  2010-02-18

5.  Histone modification levels are predictive for gene expression.

Authors:  Rosa Karlić; Ho-Ryun Chung; Julia Lasserre; Kristian Vlahovicek; Martin Vingron
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

6.  H3K4 tri-methylation provides an epigenetic signature of active enhancers.

Authors:  Aleksandra Pekowska; Touati Benoukraf; Joaquin Zacarias-Cabeza; Mohamed Belhocine; Frederic Koch; Hélène Holota; Jean Imbert; Jean-Christophe Andrau; Pierre Ferrier; Salvatore Spicuglia
Journal:  EMBO J       Date:  2011-08-16       Impact factor: 11.598

Review 7.  Bookmarking the genome: maintenance of epigenetic information.

Authors:  Sayyed K Zaidi; Daniel W Young; Martin Montecino; Andre J van Wijnen; Janet L Stein; Jane B Lian; Gary S Stein
Journal:  J Biol Chem       Date:  2011-03-24       Impact factor: 5.157

Review 8.  Targeting deregulated epigenetic control in cancer.

Authors:  Sayyed K Zaidi; Andre J Van Wijnen; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  J Cell Physiol       Date:  2013-11       Impact factor: 6.384

9.  Distinguishing epigenetic marks of developmental and imprinting regulation.

Authors:  Kirsten R McEwen; Anne C Ferguson-Smith
Journal:  Epigenetics Chromatin       Date:  2010-01-15       Impact factor: 4.954

10.  Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes.

Authors:  Z Zhang; L Song; K Maurer; M A Petri; K E Sullivan
Journal:  Genes Immun       Date:  2009-08-27       Impact factor: 2.676

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