Literature DB >> 18291655

Wires in the soup: quantitative models of cell signaling.

Raymond Cheong1, Andre Levchenko.   

Abstract

Living cells are capable of extracting information from their environments and mounting appropriate responses to a variety of challenges. The underlying signal transduction networks enabling this response can be quite complex, and so sophisticated computational modeling coupled with precise experimentation is required to unravel them. Although we are still at the beginning of this process, some recent examples of integrative analysis of cell signaling are very encouraging. Quantitative models of signaling pathways (e.g. NF-kappaB) can be gradually constructed through continuous experimental validation, and important lessons can be learnt from such exercises.

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Year:  2008        PMID: 18291655      PMCID: PMC3895447          DOI: 10.1016/j.tcb.2008.01.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  40 in total

Review 1.  Shaping the nuclear action of NF-kappaB.

Authors:  Lin-Feng Chen; Warner C Greene
Journal:  Nat Rev Mol Cell Biol       Date:  2004-05       Impact factor: 94.444

2.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

3.  One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers.

Authors:  Thomas H Leung; Alexander Hoffmann; David Baltimore
Journal:  Cell       Date:  2004-08-20       Impact factor: 41.582

Review 4.  Beta-arrestins and cell signaling.

Authors:  Scott M DeWire; Seungkirl Ahn; Robert J Lefkowitz; Sudha K Shenoy
Journal:  Annu Rev Physiol       Date:  2007       Impact factor: 19.318

5.  Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway.

Authors:  Kwang-Hyun Cho; Sung-Young Shin; Hyeon-Woo Lee; Olaf Wolkenhauer
Journal:  Genome Res       Date:  2003-10-14       Impact factor: 9.043

Review 6.  Nuclear factor-kappaB: its role in health and disease.

Authors:  Ashok Kumar; Yasunari Takada; Aladin M Boriek; Bharat B Aggarwal
Journal:  J Mol Med (Berl)       Date:  2004-06-03       Impact factor: 4.599

7.  Mathematical model of NF-kappaB regulatory module.

Authors:  Tomasz Lipniacki; Pawel Paszek; A R Allan R Brasier; Bruce Luxon; Marek Kimmel
Journal:  J Theor Biol       Date:  2004-05-21       Impact factor: 2.691

8.  In silico simulation of inhibitor drug effects on nuclear factor-kappaB pathway dynamics.

Authors:  Myong-Hee Sung; Richard Simon
Journal:  Mol Pharmacol       Date:  2004-07       Impact factor: 4.436

9.  Signal processing in the TGF-beta superfamily ligand-receptor network.

Authors:  Jose M G Vilar; Ronald Jansen; Chris Sander
Journal:  PLoS Comput Biol       Date:  2006-01-27       Impact factor: 4.475

10.  The roles of APC and Axin derived from experimental and theoretical analysis of the Wnt pathway.

Authors:  Ethan Lee; Adrian Salic; Roland Krüger; Reinhart Heinrich; Marc W Kirschner
Journal:  PLoS Biol       Date:  2003-10-13       Impact factor: 8.029

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  5 in total

1.  Trafficking coordinate description of intracellular transport control of signaling networks.

Authors:  Jose M G Vilar; Leonor Saiz
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

2.  Quantitative analysis of receptor tyrosine kinase-effector coupling at functionally relevant stimulus levels.

Authors:  Simin Li; Devayani Bhave; Jennifer M Chow; Thomas V Riera; Sandra Schlee; Simone Rauch; Mariya Atanasova; Richard L Cate; Adrian Whitty
Journal:  J Biol Chem       Date:  2015-01-29       Impact factor: 5.157

3.  An integrated micro-electro-fluidic and protein arraying system for parallel analysis of cell responses to controlled microenvironments.

Authors:  Zhizhong Yin; Sheng-Ce Tao; Raymond Cheong; Heng Zhu; Andre Levchenko
Journal:  Integr Biol (Camb)       Date:  2010-08-10       Impact factor: 2.192

Review 4.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

5.  Nuclear factor-kappa B localization and function within intrauterine tissues from term and preterm labor and cultured fetal membranes.

Authors:  Sonali Vora; Asad Abbas; Chong J Kim; Taryn L S Summerfield; Juan P Kusanovic; Jay D Iams; Roberto Romero; Douglas A Kniss; William E Ackerman
Journal:  Reprod Biol Endocrinol       Date:  2010-01-25       Impact factor: 5.211

  5 in total

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