Literature DB >> 18290628

Predicting intrinsic aqueous solubility by a thermodynamic cycle.

David S Palmer1, Antonio Llinàs, Iñaki Morao, Graeme M Day, Jonathan M Goodman, Robert C Glen, John B O Mitchell.   

Abstract

We report methods to predict the intrinsic aqueous solubility of crystalline organic molecules from two different thermodynamic cycles. We find that direct computation of solubility, via ab initio calculation of thermodynamic quantities at an affordable level of theory, cannot deliver the required accuracy. Therefore, we have turned to a mixture of direct computation and informatics, using the calculated thermodynamic properties, along with a few other key descriptors, in regression models. The prediction of log intrinsic solubility (referred to mol/L) by a three-variable linear regression equation gave r(2)=0.77 and RMSE=0.71 for an external test set comprising drug molecules. The model includes a calculated crystal lattice energy which provides a computational method to account for the interactions in the solid state. We suggest that it is not necessary to know the polymorphic form prior to prediction. Furthermore, the method developed here may be applicable to other solid-state systems such as salts or cocrystals.

Mesh:

Year:  2008        PMID: 18290628     DOI: 10.1021/mp7000878

Source DB:  PubMed          Journal:  Mol Pharm        ISSN: 1543-8384            Impact factor:   4.939


  13 in total

1.  Uniting cheminformatics and chemical theory to predict the intrinsic aqueous solubility of crystalline druglike molecules.

Authors:  James L McDonagh; Neetika Nath; Luna De Ferrari; Tanja van Mourik; John B O Mitchell
Journal:  J Chem Inf Model       Date:  2014-03-11       Impact factor: 4.956

2.  Modeling free energies of solvation in olive oil.

Authors:  Adam C Chamberlin; David G Levitt; Christopher J Cramer; Donald G Truhlar
Journal:  Mol Pharm       Date:  2008 Nov-Dec       Impact factor: 4.939

Review 3.  Enzyme informatics.

Authors:  Rosanna G Alderson; Luna De Ferrari; Lazaros Mavridis; James L McDonagh; John B O Mitchell; Neetika Nath
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

4.  An optimized intermolecular force field for hydrogen-bonded organic molecular crystals using atomic multipole electrostatics.

Authors:  Edward O Pyzer-Knapp; Hugh P G Thompson; Graeme M Day
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-07-16

5.  Can human experts predict solubility better than computers?

Authors:  Samuel Boobier; Anne Osbourn; John B O Mitchell
Journal:  J Cheminform       Date:  2017-12-13       Impact factor: 8.489

6.  Computational design of molecules for an all-quinone redox flow battery.

Authors:  Süleyman Er; Changwon Suh; Michael P Marshak; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2014-11-21       Impact factor: 9.825

Review 7.  Computational prediction of drug solubility in water-based systems: Qualitative and quantitative approaches used in the current drug discovery and development setting.

Authors:  Christel A S Bergström; Per Larsson
Journal:  Int J Pharm       Date:  2018-02-06       Impact factor: 5.875

8.  The influence of solid state information and descriptor selection on statistical models of temperature dependent aqueous solubility.

Authors:  Richard L Marchese Robinson; Kevin J Roberts; Elaine B Martin
Journal:  J Cheminform       Date:  2018-08-29       Impact factor: 5.514

9.  Machine learning methods in chemoinformatics.

Authors:  John B O Mitchell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09-01

10.  Challenges in the use of atomistic simulations to predict solubilities of drug-like molecules.

Authors:  Guilherme Duarte Ramos Matos; David L Mobley
Journal:  F1000Res       Date:  2018-05-31
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