Literature DB >> 18282700

The transition from transcriptional initiation to elongation.

Joseph T Wade1, Kevin Struhl.   

Abstract

Transcription is the first step in gene expression, and its regulation underlies multicellular development and the response to environmental changes. Most studies of transcriptional regulation have focused on the recruitment of RNA polymerase to promoters. However, recent work has shown that, for many promoters, post-recruitment steps in transcriptional initiation are likely to be rate limiting. The rate at which RNA polymerase transitions from transcriptional initiation to elongation varies dramatically between promoters and between organisms and is the target of multiple regulatory proteins that can function to both repress and activate transcription.

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Year:  2008        PMID: 18282700      PMCID: PMC2563432          DOI: 10.1016/j.gde.2007.12.008

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  64 in total

Review 1.  The functional and regulatory roles of sigma factors in transcription.

Authors:  C A Gross; C Chan; A Dombroski; T Gruber; M Sharp; J Tupy; B Young
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1998

Review 2.  Fundamentally different logic of gene regulation in eukaryotes and prokaryotes.

Authors:  K Struhl
Journal:  Cell       Date:  1999-07-09       Impact factor: 41.582

3.  Enhancement of TBP binding by activators and general transcription factors.

Authors:  X Y Li; A Virbasius; X Zhu; M R Green
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

4.  Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme.

Authors:  L Kuras; K Struhl
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

5.  Transcriptional activation by artificial recruitment in mammalian cells.

Authors:  J Nevado; L Gaudreau; M Adam; M Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

Review 6.  ppGpp: a global regulator in Escherichia coli.

Authors:  Lisa U Magnusson; Anne Farewell; Thomas Nyström
Journal:  Trends Microbiol       Date:  2005-05       Impact factor: 17.079

7.  Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

Authors:  Marijana Radonjic; Jean-Christophe Andrau; Philip Lijnzaad; Patrick Kemmeren; Thessa T J P Kockelkorn; Dik van Leenen; Nynke L van Berkum; Frank C P Holstege
Journal:  Mol Cell       Date:  2005-04-15       Impact factor: 17.970

8.  A high-resolution map of active promoters in the human genome.

Authors:  Tae Hoon Kim; Leah O Barrera; Ming Zheng; Chunxu Qu; Michael A Singer; Todd A Richmond; Yingnian Wu; Roland D Green; Bing Ren
Journal:  Nature       Date:  2005-06-29       Impact factor: 49.962

9.  Nuclear actin and myosin I are required for RNA polymerase I transcription.

Authors:  Vlada V Philimonenko; Jian Zhao; Sebastian Iben; Hana Dingová; Katarína Kyselá; Michal Kahle; Hanswalter Zentgraf; Wilma A Hofmann; Primal de Lanerolle; Pavel Hozák; Ingrid Grummt
Journal:  Nat Cell Biol       Date:  2004-11-21       Impact factor: 28.824

10.  Mediator requirement for both recruitment and postrecruitment steps in transcription initiation.

Authors:  Gang Wang; Michael A Balamotis; Jennitte L Stevens; Yuki Yamaguchi; Hiroshi Handa; Arnold J Berk
Journal:  Mol Cell       Date:  2005-03-04       Impact factor: 17.970

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  63 in total

1.  Identification of multiple rate-limiting steps during the human mitochondrial transcription cycle in vitro.

Authors:  Maria F Lodeiro; Akira U Uchida; Jamie J Arnold; Shelley L Reynolds; Ibrahim M Moustafa; Craig E Cameron
Journal:  J Biol Chem       Date:  2010-03-29       Impact factor: 5.157

Review 2.  Histone H2B ubiquitination and beyond: Regulation of nucleosome stability, chromatin dynamics and the trans-histone H3 methylation.

Authors:  Mahesh B Chandrasekharan; Fu Huang; Zu-Wen Sun
Journal:  Epigenetics       Date:  2010-08-16       Impact factor: 4.528

3.  HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cells.

Authors:  Jonathan E Reeder; Youn-Tae Kwak; Ryan P McNamara; Christian V Forst; Iván D'Orso
Journal:  Elife       Date:  2015-10-21       Impact factor: 8.140

4.  Inhibition of BET proteins impairs estrogen-mediated growth and transcription in breast cancers by pausing RNA polymerase advancement.

Authors:  Surojeet Sengupta; Michael C Biarnes; Robert Clarke; V Craig Jordan
Journal:  Breast Cancer Res Treat       Date:  2015-02-27       Impact factor: 4.872

5.  Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex.

Authors:  Anna J Jasiak; Holger Hartmann; Elena Karakasili; Marian Kalocsay; Andrew Flatley; Elisabeth Kremmer; Katja Strässer; Dietmar E Martin; Johannes Söding; Patrick Cramer
Journal:  J Biol Chem       Date:  2008-07-30       Impact factor: 5.157

6.  Assembly and mobility of exon-exon junction complexes in living cells.

Authors:  Ute Schmidt; Kang-Bin Im; Carola Benzing; Snjezana Janjetovic; Karsten Rippe; Peter Lichter; Malte Wachsmuth
Journal:  RNA       Date:  2009-03-26       Impact factor: 4.942

7.  Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle.

Authors:  Clarissa Scholes; Angela H DePace; Álvaro Sánchez
Journal:  Cell Syst       Date:  2016-12-29       Impact factor: 10.304

8.  A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.

Authors:  Xin-Jian He; Yi-Feng Hsu; Shihua Zhu; Hai-Liang Liu; Olga Pontes; Jianhua Zhu; Xinping Cui; Co-Shine Wang; Jian-Kang Zhu
Journal:  Genes Dev       Date:  2009-11-10       Impact factor: 11.361

Review 9.  How eukaryotic genes are transcribed.

Authors:  Bryan J Venters; B Franklin Pugh
Journal:  Crit Rev Biochem Mol Biol       Date:  2009-06       Impact factor: 8.250

10.  Yeast genetic analysis reveals the involvement of chromatin reassembly factors in repressing HIV-1 basal transcription.

Authors:  Manuela Vanti; Edurne Gallastegui; Iñaki Respaldiza; Alfonso Rodríguez-Gil; Fernando Gómez-Herreros; Silvia Jimeno-González; Albert Jordan; Sebastián Chávez
Journal:  PLoS Genet       Date:  2009-01-16       Impact factor: 5.917

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