Literature DB >> 18282471

Interaction networks for systems biology.

Samuel Bader1, Sebastian Kühner, Anne-Claude Gavin.   

Abstract

Cellular functions are almost always the result of the coordinated action of several proteins, interacting in protein complexes, pathways or networks. Progress made in devising suitable tools for analysis of protein-protein interactions, have recently made it possible to chart interaction networks on a large-scale. The aim of this review is to provide a short overview of the most promising contributions of interaction networks to human biology, structural biology and human genetics.

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Year:  2008        PMID： 18282471     DOI： 10.1016/j.febslet.2008.02.015

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  31 in total

1.  Analyzing the homeostasis of signaling proteins by a combination of Western blot and fluorescence correlation spectroscopy.

Authors:  Yi-Da Chung; Michael D Sinzinger; Petra Bovee-Geurts; Marina Krause; Sip Dinkla; Irma Joosten; Werner J Koopman; Merel J W Adjobo-Hermans; Roland Brock
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

Review 2.  Protein-protein interaction map is a key gateway into liver regeneration.

Authors:  Chao Xie; Jin Gao; Run-Zhi Zhu; Yun-Sheng Yuan; Hong-Lin He; Qiu-Shi Huang; Wei Han; Yan Yu
Journal:  World J Gastroenterol       Date:  2010-07-28       Impact factor: 5.742

Review 3.  Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.

Authors:  Robyn M Kaake; Xiaorong Wang; Lan Huang
Journal:  Mol Cell Proteomics       Date:  2010-05-05       Impact factor: 5.911

4.  Integrated analysis of co-expressed MAP kinase substrates in Arabidopsis thaliana.

Authors:  Sorina C Popescu; George V Popescu; Michael Snyder; Savithramma P Dinesh-Kumar
Journal:  Plant Signal Behav       Date:  2009-06-25

Review 5.  Embryonic stem cell interactomics: the beginning of a long road to biological function.

Authors:  Maram Yousefi; Vahid Hajihoseini; Woojin Jung; Batol Hosseinpour; Hassan Rassouli; Bonghee Lee; Hossein Baharvand; KiYoung Lee; Ghasem Hosseini Salekdeh
Journal:  Stem Cell Rev Rep       Date:  2012-12       Impact factor: 5.739

6.  ITM Probe: analyzing information flow in protein networks.

Authors:  Aleksandar Stojmirović; Yi-Kuo Yu
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

7.  Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation.

Authors:  Subir K Nandy; Paula Jouhten; Jens Nielsen
Journal:  BMC Syst Biol       Date:  2010-05-25

8.  Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex.

Authors:  Jose Luis Ortega-Roldan; Malene Ringkjøbing Jensen; Bernhard Brutscher; Ana I Azuaga; Martin Blackledge; Nico A J van Nuland
Journal:  Nucleic Acids Res       Date:  2009-04-09       Impact factor: 16.971

9.  A reliable measure of similarity based on dependency for short time series: an application to gene expression networks.

Authors:  Mônica G Campiteli; Frederico M Soriani; Iran Malavazi; Osame Kinouchi; Carlos A B Pereira; Gustavo H Goldman
Journal:  BMC Bioinformatics       Date:  2009-08-28       Impact factor: 3.169

10.  Literature-curated protein interaction datasets.

Authors:  Michael E Cusick; Haiyuan Yu; Alex Smolyar; Kavitha Venkatesan; Anne-Ruxandra Carvunis; Nicolas Simonis; Jean-François Rual; Heather Borick; Pascal Braun; Matija Dreze; Jean Vandenhaute; Mary Galli; Junshi Yazaki; David E Hill; Joseph R Ecker; Frederick P Roth; Marc Vidal
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547
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