Literature DB >> 18268842

MicroRNA metabolism in plants.

Xuemei Chen1.   

Abstract

MicroRNAs (miRNAs) are 21- to 24-nucleotide (nt) RNAs that are the final products of nonprotein-coding genes. miRNAs are processed from single-stranded precursors that form hairpin structures, with the miRNAs residing in one arm of the stems. miRNAs were first isolated and recognized as regulators of protein-coding genes through forward genetic screens in Caenorhabditis elegans, but were not recognized as universal regulators of gene expression in animals until three landmark studies in year 2001 demonstrated the widespread existence of miRNAs in animals. Soon after, studies from a few groups identified a number of miRNAs from Arabidopsis, providing the first evidence for the existence of these regulatory molecules in plants. Since then, numerous miRNAs from a number of land plants ranging from mosses to flowering plants were identified, and functional studies in Arabidopsis established a framework of understanding of miRNA biogenesis and function. This chapter summarizes the current knowledge as well as gaps in our understanding of plant miRNA biogenesis and function.

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Year:  2008        PMID: 18268842      PMCID: PMC2570777          DOI: 10.1007/978-3-540-75157-1_6

Source DB:  PubMed          Journal:  Curr Top Microbiol Immunol        ISSN: 0070-217X            Impact factor:   4.291


  100 in total

1.  The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings.

Authors:  Madhuri Gandikota; Rainer P Birkenbihl; Susanne Höhmann; Guillermo H Cardon; Heinz Saedler; Peter Huijser
Journal:  Plant J       Date:  2007-01-08       Impact factor: 6.417

2.  miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii.

Authors:  Attila Molnár; Frank Schwach; David J Studholme; Eva C Thuenemann; David C Baulcombe
Journal:  Nature       Date:  2007-05-30       Impact factor: 49.962

3.  The N-terminal double-stranded RNA binding domains of Arabidopsis HYPONASTIC LEAVES1 are sufficient for pre-microRNA processing.

Authors:  Feijie Wu; Lin Yu; Wenguang Cao; Yanfei Mao; Zhongyuan Liu; Yuke He
Journal:  Plant Cell       Date:  2007-03-02       Impact factor: 11.277

4.  A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

Authors:  Tao Zhao; Guanglin Li; Shijun Mi; Shan Li; Gregory J Hannon; Xiu-Jie Wang; Yijun Qi
Journal:  Genes Dev       Date:  2007-04-30       Impact factor: 11.361

5.  Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.

Authors:  Patrick Sieber; Frank Wellmer; Jacqueline Gheyselinck; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Development       Date:  2007-02-07       Impact factor: 6.868

6.  Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors.

Authors:  István Papp; M Florian Mette; Werner Aufsatz; Lucia Daxinger; Stephen E Schauer; Animesh Ray; Johannes van der Winden; Marjori Matzke; Antonius J M Matzke
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

7.  Role of RNA polymerase IV in plant small RNA metabolism.

Authors:  Xiaoyu Zhang; Ian R Henderson; Cheng Lu; Pamela J Green; Steven E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

8.  High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.

Authors:  Noah Fahlgren; Miya D Howell; Kristin D Kasschau; Elisabeth J Chapman; Christopher M Sullivan; Jason S Cumbie; Scott A Givan; Theresa F Law; Sarah R Grant; Jeffery L Dangl; James C Carrington
Journal:  PLoS One       Date:  2007-02-14       Impact factor: 3.240

9.  Genome-wide profiling and analysis of Arabidopsis siRNAs.

Authors:  Kristin D Kasschau; Noah Fahlgren; Elisabeth J Chapman; Christopher M Sullivan; Jason S Cumbie; Scott A Givan; James C Carrington
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

10.  Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance.

Authors:  Stéphanie Boutet; Franck Vazquez; Jun Liu; Christophe Béclin; Mathilde Fagard; Ariane Gratias; Jean Benoit Morel; Patrice Crété; Xuemei Chen; Hervé Vaucheret
Journal:  Curr Biol       Date:  2003-05-13       Impact factor: 10.834

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  36 in total

1.  Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing.

Authors:  Lei Chen; Yuanyuan Ren; Yiyun Zhang; Jichen Xu; Zhiyi Zhang; Yanwei Wang
Journal:  Planta       Date:  2011-11-19       Impact factor: 4.116

2.  Characterization of grapevine microR164 and its target genes.

Authors:  Xin Sun; Nicholas Kibet Korir; Jian Han; Ling-Fei Shangguan; Emrul Kayesh; Xiang-Peng Leng; Jing-Gui Fang
Journal:  Mol Biol Rep       Date:  2012-06-24       Impact factor: 2.316

3.  A characterization of grapevine of GRAS domain transcription factor gene family.

Authors:  Xin Sun; Zhengqiang Xie; Cheng Zhang; Qian Mu; Weimin Wu; Baoju Wang; Jinggui Fang
Journal:  Funct Integr Genomics       Date:  2016-02-03       Impact factor: 3.410

4.  Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry.

Authors:  He Li; Wenjuan Mao; Wei Liu; Hongyan Dai; Yuexue Liu; Yue Ma; Zhihong Zhang
Journal:  Planta       Date:  2013-06-27       Impact factor: 4.116

5.  Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis.

Authors:  Emanuel A Devers; Anja Branscheid; Patrick May; Franziska Krajinski
Journal:  Plant Physiol       Date:  2011-05-13       Impact factor: 8.340

6.  Identification of novel miRNAs and miRNA dependent developmental shifts of gene expression in Arabidopsis thaliana.

Authors:  Shuhua Zhan; Lewis Lukens
Journal:  PLoS One       Date:  2010-04-13       Impact factor: 3.240

7.  A silencing safeguard: links between RNA silencing and mRNA processing in Arabidopsis.

Authors:  Xuemei Chen
Journal:  Dev Cell       Date:  2008-06       Impact factor: 12.270

8.  Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response.

Authors:  Jingyu Zhang; Yunyuan Xu; Qing Huan; Kang Chong
Journal:  BMC Genomics       Date:  2009-09-23       Impact factor: 3.969

9.  Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.

Authors:  Francisco Merchan; Adnane Boualem; Martin Crespi; Florian Frugier
Journal:  Genome Biol       Date:  2009-12-01       Impact factor: 13.583

10.  Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis.

Authors:  M S Krasnikova; I A Milyutina; V K Bobrova; L V Ozerova; A V Troitsky; A G Solovyev; S Y Morozov
Journal:  J Biomed Biotechnol       Date:  2009-10-13
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