Literature DB >> 18268326

Mechanisms of prion protein assembly into amyloid.

Jan Stöhr1, Nicole Weinmann, Holger Wille, Tina Kaimann, Luitgard Nagel-Steger, Eva Birkmann, Giannantonio Panza, Stanley B Prusiner, Manfred Eigen, Detlev Riesner.   

Abstract

The conversion of the alpha-helical, cellular isoform of the prion protein (PrP(C)) to the insoluble, beta-sheet-rich, infectious, disease-causing isoform (PrP(Sc)) is the key event in prion diseases. In an earlier study, several forms of PrP were converted into a fibrillar state by using an in vitro conversion system consisting of low concentrations of SDS and 250 mM NaCl. Here, we characterize the structure of the fibril precursor state, that is, the soluble state under fibrillization conditions. CD spectroscopy, analytical ultracentrifugation, and chemical cross-linking indicate that the precursor state exists in a monomer-dimer equilibrium of partially denatured, alpha-helical PrP, with a well defined contact site of the subunits in the dimer. Using fluorescence with thioflavin T, we monitored and quantitatively described the kinetics of seeded fibril formation, including dependence of the reaction on substrate and seed concentrations. Exponential, seed-enhanced growth can be achieved in homogeneous solution, which can be enhanced by sonication. From these data, we propose a mechanistic model of fibrillization, including the presence of several intermediate structures. These studies also provide a simplified amplification system for prions.

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Year:  2008        PMID: 18268326      PMCID: PMC2268150          DOI: 10.1073/pnas.0712036105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Further analysis of nucleic acids in purified scrapie prion preparations by improved return refocusing gel electrophoresis.

Authors:  K Kellings; N Meyer; C Mirenda; S B Prusiner; D Riesner
Journal:  J Gen Virol       Date:  1992-04       Impact factor: 3.891

2.  Prion kinetics.

Authors:  Joanna Masel; Vincent A A Jansen
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

3.  N-terminal truncation of the scrapie-associated form of PrP by lysosomal protease(s): implications regarding the site of conversion of PrP to the protease-resistant state.

Authors:  B Caughey; G J Raymond; D Ernst; R E Race
Journal:  J Virol       Date:  1991-12       Impact factor: 5.103

4.  Scrapie prion rod formation in vitro requires both detergent extraction and limited proteolysis.

Authors:  M P McKinley; R K Meyer; L Kenaga; F Rahbar; R Cotter; A Serban; S B Prusiner
Journal:  J Virol       Date:  1991-03       Impact factor: 5.103

5.  Molecular model of an alpha-helical prion protein dimer and its monomeric subunits as derived from chemical cross-linking and molecular modeling calculations.

Authors:  T Kaimann; S Metzger; K Kuhlmann; B Brandt; E Birkmann; H-D Höltje; D Riesner
Journal:  J Mol Biol       Date:  2007-11-21       Impact factor: 5.469

6.  Atypical effect of salts on the thermodynamic stability of human prion protein.

Authors:  Adrian C Apetri; Witold K Surewicz
Journal:  J Biol Chem       Date:  2003-04-03       Impact factor: 5.157

7.  Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins.

Authors:  K M Pan; M Baldwin; J Nguyen; M Gasset; A Serban; D Groth; I Mehlhorn; Z Huang; R J Fletterick; F E Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

8.  Scrapie prions aggregate to form amyloid-like birefringent rods.

Authors:  S B Prusiner; M P McKinley; K A Bowman; D C Bolton; P E Bendheim; D F Groth; G G Glenner
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

9.  A protease-resistant protein is a structural component of the scrapie prion.

Authors:  M P McKinley; D C Bolton; S B Prusiner
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

10.  Synthetic mammalian prions.

Authors:  Giuseppe Legname; Ilia V Baskakov; Hoang-Oanh B Nguyen; Detlev Riesner; Fred E Cohen; Stephen J DeArmond; Stanley B Prusiner
Journal:  Science       Date:  2004-07-30       Impact factor: 47.728

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  51 in total

1.  Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins.

Authors:  Evgeniy V Petrotchenko; Jason J Serpa; Darryl B Hardie; Mark Berjanskii; Bow P Suriyamongkol; David S Wishart; Christoph H Borchers
Journal:  Mol Cell Proteomics       Date:  2012-03-21       Impact factor: 5.911

2.  A generic crystallization-like model that describes the kinetics of amyloid fibril formation.

Authors:  Rosa Crespo; Fernando A Rocha; Ana M Damas; Pedro M Martins
Journal:  J Biol Chem       Date:  2012-07-05       Impact factor: 5.157

3.  Recombinantly produced hydrophobins from fungal analogues as highly surface-active performance proteins.

Authors:  Wendel Wohlleben; Thomas Subkowski; Claus Bollschweiler; Bernhard von Vacano; Yaqian Liu; Wolfgang Schrepp; Ulf Baus
Journal:  Eur Biophys J       Date:  2009-03-17       Impact factor: 1.733

4.  Crowded cell-like environment accelerates the nucleation step of amyloidogenic protein misfolding.

Authors:  Zheng Zhou; Jun-Bao Fan; Hai-Li Zhu; Frank Shewmaker; Xu Yan; Xi Chen; Jie Chen; Geng-Fu Xiao; Lin Guo; Yi Liang
Journal:  J Biol Chem       Date:  2009-09-10       Impact factor: 5.157

5.  Nanopore analysis reveals differences in structural stability of ovine PrP(C) proteins corresponding to scrapie susceptible (VRQ) and resistance (ARR) genotypes.

Authors:  Claudia Avis Madampage; Kristen Marciniuk; Pekka Määttänen; Neil R Cashman; Andrew Potter; Jeremy S Lee; Scott Napper
Journal:  Prion       Date:  2014-01-08       Impact factor: 3.931

6.  Distinct structures of scrapie prion protein (PrPSc)-seeded versus spontaneous recombinant prion protein fibrils revealed by hydrogen/deuterium exchange.

Authors:  Vytautas Smirnovas; Jae-Il Kim; Xiaojun Lu; Ryuichiro Atarashi; Byron Caughey; Witold K Surewicz
Journal:  J Biol Chem       Date:  2009-07-13       Impact factor: 5.157

7.  The role of liquid-liquid phase separation in aggregation of the TDP-43 low-complexity domain.

Authors:  W Michael Babinchak; Raza Haider; Benjamin K Dumm; Prottusha Sarkar; Krystyna Surewicz; Jin-Kyu Choi; Witold K Surewicz
Journal:  J Biol Chem       Date:  2019-02-27       Impact factor: 5.157

Review 8.  Prion diseases and their biochemical mechanisms.

Authors:  Nathan J Cobb; Witold K Surewicz
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

9.  Lipopolysaccharide induced conversion of recombinant prion protein.

Authors:  Fozia Saleem; Trent C Bjorndahl; Carol L Ladner; Rolando Perez-Pineiro; Burim N Ametaj; David S Wishart
Journal:  Prion       Date:  2014-05-12       Impact factor: 3.931

10.  Prion protein self-peptides modulate prion interactions and conversion.

Authors:  Alan Rigter; Jan Priem; Drophatie Timmers-Parohi; Jan P M Langeveld; Fred G van Zijderveld; Alex Bossers
Journal:  BMC Biochem       Date:  2009-11-30       Impact factor: 4.059

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