Literature DB >> 18265986

Gene deletion and allelic replacement in the filamentous fungus Podospora anserina.

Riyad El-Khoury1, Carole H Sellem, Evelyne Coppin, Antoine Boivin, Marc F P M Maas, Robert Debuchy, Annie Sainsard-Chanet.   

Abstract

Gene replacement via homologous recombination is a fundamental tool for the analysis of gene function. However, this event is rare in organisms like the filamentous fungus Podospora anserina. We show here that deletion of the PaKu70 gene is an efficient strategy for improving gene manipulation in this organism. By using the DeltaPaKu70 strain, it is now possible (1) to produce deletion mutants with an efficiency of 100%, (2) to achieve allelic exchange by introducing a mutated allele associated with a selection cassette at the locus, (3) to introduce a mutation in a gene without co-insertion of a selectable marker and without any modification of the target locus.

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Year:  2008        PMID: 18265986     DOI: 10.1007/s00294-008-0180-3

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  21 in total

1.  Co-expression of the mating-type genes involved in internuclear recognition is lethal in Podospora anserina.

Authors:  E Coppin; R Debuchy
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors.

Authors:  Hildur V Colot; Gyungsoon Park; Gloria E Turner; Carol Ringelberg; Christopher M Crew; Liubov Litvinkova; Richard L Weiss; Katherine A Borkovich; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-26       Impact factor: 11.205

3.  Highly efficient generation of signal transduction knockout mutants using a fungal strain deficient in the mammalian ku70 ortholog.

Authors:  Stefanie Pöggeler; Ulrich Kück
Journal:  Gene       Date:  2006-04-30       Impact factor: 3.688

4.  Overexpression of the alternative oxidase restores senescence and fertility in a long-lived respiration-deficient mutant of Podospora anserina.

Authors:  S Lorin; E Dufour; J Boulay; O Begel; S Marsy; A Sainsard-Chanet
Journal:  Mol Microbiol       Date:  2001-12       Impact factor: 3.501

5.  The mat- allele of Podospora anserina contains three regulatory genes required for the development of fertilized female organs.

Authors:  R Debuchy; S Arnaise; G Lecellier
Journal:  Mol Gen Genet       Date:  1993-12

6.  Homologous and heterologous expression of a ribosomal protein gene in Podospora anserina requires an intron.

Authors:  M Dequard-Chablat; A Rötig
Journal:  Mol Gen Genet       Date:  1997-02-20

7.  Partners of Rpb8p, a small subunit shared by yeast RNA polymerases I, II and III.

Authors:  J F Briand; F Navarro; P Rematier; C Boschiero; S Labarre; M Werner; G V Shpakovski; P Thuriaux
Journal:  Mol Cell Biol       Date:  2001-09       Impact factor: 4.272

8.  Improvements to gene deletion in the fungal pathogen Cryptococcus neoformans: absence of Ku proteins increases homologous recombination, and co-transformation of independent DNA molecules allows rapid complementation of deletion phenotypes.

Authors:  Chelsey L Goins; Kimberly J Gerik; Jennifer K Lodge
Journal:  Fungal Genet Biol       Date:  2006-05-22       Impact factor: 3.495

9.  A versatile and efficient gene-targeting system for Aspergillus nidulans.

Authors:  Tania Nayak; Edyta Szewczyk; C Elizabeth Oakley; Aysha Osmani; Leena Ukil; Sandra L Murray; Michael J Hynes; Stephen A Osmani; Berl R Oakley
Journal:  Genetics       Date:  2005-12-30       Impact factor: 4.562

10.  Heat shock at an elevated temperature improves transformation efficiency of protoplasts from Podospora anserina.

Authors:  T Bergès; C Barreau
Journal:  J Gen Microbiol       Date:  1989-03
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  31 in total

1.  Mutations in two zinc-cluster proteins activate alternative respiratory and gluconeogenic pathways and restore senescence in long-lived respiratory mutants of Podospora anserina.

Authors:  Carole H Sellem; Elodie Bovier; Séverine Lorin; Annie Sainsard-Chanet
Journal:  Genetics       Date:  2009-03-02       Impact factor: 4.562

2.  Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies.

Authors:  Luis F Larrondo; Hildur V Colot; Christopher L Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Eukaryot Cell       Date:  2009-03-13

3.  Genetic and functional investigation of Zn(2)Cys(6) transcription factors RSE2 and RSE3 in Podospora anserina.

Authors:  Elodie Bovier; Carole H Sellem; Adeline Humbert; Annie Sainsard-Chanet
Journal:  Eukaryot Cell       Date:  2013-11-01

4.  A ku70 null mutant improves gene targeting frequency in the fungal pathogen Verticillium dahliae.

Authors:  Xiliang Qi; Xiaofeng Su; Huiming Guo; Juncang Qi; Hongmei Cheng
Journal:  World J Microbiol Biotechnol       Date:  2015-12       Impact factor: 3.312

5.  Does autophagy mediate age-dependent effect of dietary restriction responses in the filamentous fungus Podospora anserina?

Authors:  Anne D van Diepeningen; Daniël J P Engelmoer; Carole H Sellem; Daphne H E W Huberts; S Marijke Slakhorst; Annie Sainsard-Chanet; Bas J Zwaan; Rolf F Hoekstra; Alfons J M Debets
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-05       Impact factor: 6.237

6.  Bidirectional-genetics platform, a dual-purpose mutagenesis strategy for filamentous fungi.

Authors:  Jaejin Park; Yong-Hwan Lee
Journal:  Eukaryot Cell       Date:  2013-09-20

7.  NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi.

Authors:  Jens Heller; Corinne Clavé; Pierre Gladieux; Sven J Saupe; N Louise Glass
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

8.  Combinations of Spok genes create multiple meiotic drivers in Podospora.

Authors:  Aaron A Vogan; S Lorena Ament-Velásquez; Alexandra Granger-Farbos; Jesper Svedberg; Eric Bastiaans; Alfons Jm Debets; Virginie Coustou; Hélène Yvanne; Corinne Clavé; Sven J Saupe; Hanna Johannesson
Journal:  Elife       Date:  2019-07-26       Impact factor: 8.140

9.  Maintaining two mating types: structure of the mating type locus and its role in heterokaryosis in Podospora anserina.

Authors:  Pierre Grognet; Frédérique Bidard; Claire Kuchly; Laetitia Chan Ho Tong; Evelyne Coppin; Jinane Ait Benkhali; Arnaud Couloux; Patrick Wincker; Robert Debuchy; Philippe Silar
Journal:  Genetics       Date:  2014-02-20       Impact factor: 4.562

10.  The S-adenosylmethionine dependent O-methyltransferase PaMTH1: a longevity assurance factor protecting Podospora anserina against oxidative stress.

Authors:  Birgit Kunstmann; Heinz D Osiewacz
Journal:  Aging (Albany NY)       Date:  2009-03-03       Impact factor: 5.682

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