Literature DB >> 18261993

Electrospray mass spectrometry to study drug-nucleic acids interactions.

Frédéric Rosu1, Edwin De Pauw, Valérie Gabelica.   

Abstract

We present here a tutorial review on the electrospray mass spectrometry technique and its applications to the study of drug-nucleic acid non-covalent complexes. Particular emphasis has been made on the basic principles of the technique, to allow even the non-specialist to design fit-for-purpose mass spectrometry experiments and interpret the results. Standard applications will be described in detail, including the determination of stoichiometries and equilibrium binding constants of non-covalent complexes, the study of binding kinetics, and the development of ligand screening assays. We also outline the potentials of more advanced and/or more recent MS-based techniques (tandem mass spectrometry, ion mobility spectrometry and gas-phase spectroscopy) for the study of the nucleic acid-ligand complexes.

Mesh:

Substances:

Year:  2008        PMID: 18261993     DOI: 10.1016/j.biochi.2008.01.005

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  30 in total

Review 1.  RNA Structural Differentiation: Opportunities with Pattern Recognition.

Authors:  Christopher S Eubanks; Amanda E Hargrove
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Heterocyclic dications as a new class of telomeric G-quadruplex targeting agents.

Authors:  Rupesh Nanjunda; Caterina Musetti; Arvind Kumar; Mohamed A Ismail; Abdelbasset A Farahat; Siming Wang; Claudia Sissi; Manlio Palumbo; David W Boykin; W David Wilson
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

3.  Mass spectrometric studies of alkali metal ion binding on thrombin-binding aptamer DNA.

Authors:  Eun Sun Hong; Hye-Joo Yoon; Byungjoo Kim; Yong-Hyeon Yim; Hun-Young So; Seung Koo Shin
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-02       Impact factor: 3.109

4.  A modified fluorescent intercalator displacement assay for RNA ligand discovery.

Authors:  Papa Nii Asare-Okai; Christine S Chow
Journal:  Anal Biochem       Date:  2010-09-21       Impact factor: 3.365

5.  Identifying nonspecific ligand binding in electrospray ionization mass spectrometry using the reporter molecule method.

Authors:  Nian Sun; Jiangxiao Sun; Elena N Kitova; John S Klassen
Journal:  J Am Soc Mass Spectrom       Date:  2009-02-25       Impact factor: 3.109

6.  Ion mobility spectrometry reveals duplex DNA dissociation intermediates.

Authors:  Anastasia Burmistrova; Valérie Gabelica; Anne-Sophie Duwez; Edwin De Pauw
Journal:  J Am Soc Mass Spectrom       Date:  2013-09-06       Impact factor: 3.109

7.  ESI mass spectrometric exploration of selective recognition of G-quadruplex in c-myb oncogene promoter using a novel flexible cyclic polyamide.

Authors:  Xiaojie Cui; Qiang Zhang; Han Chen; Jiang Zhou; Gu Yuan
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-23       Impact factor: 3.109

8.  Folding and misfolding pathways of G-quadruplex DNA.

Authors:  Adrien Marchand; Valérie Gabelica
Journal:  Nucleic Acids Res       Date:  2016-10-19       Impact factor: 16.971

9.  Designed compounds for recognition of 10 base pairs of DNA with two at binding sites.

Authors:  Yang Liu; Yun Chai; Arvind Kumar; Richard R Tidwell; David W Boykin; W David Wilson
Journal:  J Am Chem Soc       Date:  2012-03-09       Impact factor: 15.419

10.  Cation involvement in telomestatin binding to g-quadruplex DNA.

Authors:  Frédéric Rosu; Valérie Gabelica; Nicolas Smargiasso; Gabriel Mazzucchelli; Kazuo Shin-Ya; Edwin De Pauw
Journal:  J Nucleic Acids       Date:  2010-06-16
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.