Literature DB >> 18259071

Purification, crystallization and preliminary structural characterization of the periplasmic domain P1 of the Escherichia coli membrane-protein insertase YidC.

Stephanie Ravaud1, Klemens Wild, Irmgard Sinning.   

Abstract

In Escherichia coli, the biogenesis of inner membrane proteins (IMPs) requires targeting and insertion factors such as the signal recognition particle (SRP) and the Sec translocon. Recent studies have identified YidC as a novel and essential component involved in membrane insertion of IMPs both in conjunction with the Sec translocon and as a separate entity. E. coli YidC is a member of the YidC (in bacteria)/Oxa1 (in mitochondria)/Alb3 (in chloroplasts) protein family and contains six transmembrane segments and a very large periplasmic domain P1. The overproduction, purification, crystallization and preliminary crystallographic studies of the native and selenomethionine-labelled P1 domain are reported here as a first step towards the elucidation of the molecular mechanism of YidC as a membrane-protein insertase.

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Year:  2008        PMID: 18259071      PMCID: PMC2374188          DOI: 10.1107/S1744309108002364

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

Review 1.  NPS@: network protein sequence analysis.

Authors:  C Combet; C Blanchet; C Geourjon; G Deléage
Journal:  Trends Biochem Sci       Date:  2000-03       Impact factor: 13.807

2.  Chloroplast YidC homolog Albino3 can functionally complement the bacterial YidC depletion strain and promote membrane insertion of both bacterial and chloroplast thylakoid proteins.

Authors:  Fenglei Jiang; Liang Yi; Misty Moore; Minyong Chen; Thomas Rohl; Klaas-Jan Van Wijk; Jan-Willem L De Gier; Ralph Henry; Ross E Dalbey
Journal:  J Biol Chem       Date:  2002-03-12       Impact factor: 5.157

Review 3.  YidC, a newly defined evolutionarily conserved protein, mediates membrane protein assembly in bacteria.

Authors:  Minyong Chen; Kun Xie; Fenglei Jiang; Liang Yi; Ross E Dalbey
Journal:  Biol Chem       Date:  2002-10       Impact factor: 3.915

4.  Recent developments in the PHENIX software for automated crystallographic structure determination.

Authors:  Paul D Adams; Kreshna Gopal; Ralf W Grosse-Kunstleve; Li-Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Reetal K Pai; Randy J Read; Tod D Romo; James C Sacchettini; Nicholas K Sauter; Laurent C Storoni; Thomas C Terwilliger
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

5.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

6.  Three-dimensional structure of the bacterial protein-translocation complex SecYEG.

Authors:  Cécile Breyton; Winfried Haase; Tom A Rapoport; Werner Kühlbrandt; Ian Collinson
Journal:  Nature       Date:  2002-08-08       Impact factor: 49.962

Review 7.  Post-crystallization treatments for improving diffraction quality of protein crystals.

Authors:  Begoña Heras; Jennifer L Martin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16

Review 8.  Oxa1/Alb3/YidC system for insertion of membrane proteins in mitochondria, chloroplasts and bacteria (review).

Authors:  Liang Yi; Ross E Dalbey
Journal:  Mol Membr Biol       Date:  2005 Jan-Apr       Impact factor: 2.857

9.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  3 in total

1.  YidC occupies the lateral gate of the SecYEG translocon and is sequentially displaced by a nascent membrane protein.

Authors:  Ilie Sachelaru; Narcis Adrian Petriman; Renuka Kudva; Patrick Kuhn; Thomas Welte; Bettina Knapp; Friedel Drepper; Bettina Warscheid; Hans-Georg Koch
Journal:  J Biol Chem       Date:  2013-04-22       Impact factor: 5.157

Review 2.  Roles of Oxa1-related inner-membrane translocases in assembly of respiratory chain complexes.

Authors:  Nathalie Bonnefoy; Heather L Fiumera; Geneviève Dujardin; Thomas D Fox
Journal:  Biochim Biophys Acta       Date:  2008-05-15

3.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

  3 in total

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