Literature DB >> 18259069

Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultrahigh resolution: crystallization and preliminary diffraction analysis.

Alena Stsiapanava1, Tana Koudelakova, Mikalai Lapkouski, Martina Pavlova, Jiri Damborsky, Ivana Kuta Smatanova.   

Abstract

The enzyme DhaA from Rhodococcus rhodochrous NCIMB 13064 belongs to the haloalkane dehalogenases, which catalyze the hydrolysis of haloalkanes to the corresponding alcohols. The haloalkane dehalogenase DhaA and its variants can be used to detoxify the industrial pollutant 1,2,3-trichloropropane (TCP). Three mutants named DhaA04, DhaA14 and DhaA15 were constructed in order to study the importance of tunnels connecting the buried active site with the surrounding solvent to the enzymatic activity. All protein mutants were crystallized using the sitting-drop vapour-diffusion method. The crystals of DhaA04 belonged to the orthorhombic space group P2(1)2(1)2(1), while the crystals of the other two mutants DhaA14 and DhaA15 belonged to the triclinic space group P1. Native data sets were collected for the DhaA04, DhaA14 and DhaA15 mutants at beamline X11 of EMBL, DESY, Hamburg to the high resolutions of 1.30, 0.95 and 1.15 A, respectively.

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Year:  2008        PMID: 18259069      PMCID: PMC2374176          DOI: 10.1107/S1744309108002066

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

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Review 2.  Evolving haloalkane dehalogenases.

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4.  Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement.

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5.  Construction and characterization of histidine-tagged haloalkane dehalogenase (LinB) of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.

Authors:  Y Nagata; K Hynková; J Damborský; M Takagi
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6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Haloalkane dehalogenases: structure of a Rhodococcus enzyme.

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Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

8.  Development of a fiber optic enzymatic biosensor for 1,2-dichloroethane.

Authors:  Derek W Campbell; Cord Müller; Kenneth F Reardon
Journal:  Biotechnol Lett       Date:  2006-05-31       Impact factor: 2.461

9.  Haloalkane dehalogenases: steady-state kinetics and halide inhibition.

Authors:  J F Schindler; P A Naranjo; D A Honaberger; C H Chang; J R Brainard; L A Vanderberg; C J Unkefer
Journal:  Biochemistry       Date:  1999-05-04       Impact factor: 3.162

10.  The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064.

Authors:  Anna N Kulakova; Michael J Larkin; Leonid A Kulakov
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  4 in total

1.  Crystallization and preliminary X-ray diffraction studies of the putative haloalkane dehalogenase DppA from Plesiocystis pacifica SIR-I.

Authors:  Xenia Bogdanović; Martin Hesseler; Gottfried J Palm; Uwe T Bornscheuer; Winfried Hinrichs
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-06-24

2.  Crystallization and preliminary X-ray diffraction analysis of the wild-type haloalkane dehalogenase DhaA and its variant DhaA13 complexed with different ligands.

Authors:  Alena Stsiapanava; Radka Chaloupkova; Andrea Fortova; Jiri Brynda; Manfred S Weiss; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-22

3.  Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94.

Authors:  Tatyana Prudnikova; Tomas Mozga; Pavlina Rezacova; Radka Chaloupkova; Yukari Sato; Yuji Nagata; Jiri Brynda; Michal Kuty; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-21

4.  A sensitive method for rapid detection of alkyl halides and dehalogenase activity using a multistep enzyme assay.

Authors:  Sebastian Fabritz; Franziska Maaß; Olga Avrutina; Tim Heiseler; Björn Steinmann; Harald Kolmar
Journal:  AMB Express       Date:  2012-09-24       Impact factor: 3.298

  4 in total

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