Literature DB >> 18259068

Crystallization and preliminary crystallographic analysis of human Ca 2+-loaded calbindin-D28k.

Chang Zhang1, Yuna Sun, Wei Wang, Yan Zhang, Ming Ma, Zhiyong Lou.   

Abstract

Calbindin-D28k is a calcium-binding protein that belongs to the troponin C superfamily. It is expressed in many tissues, including brain, intestine, kidney and pancreas, and performs roles as both a calcium buffer and a calcium sensor and carries out diverse physiological functions of importance. In order to resolve the crystal structure of human calbindin-D28k and to gain a better understanding of its biological functions, recombinant human calbindin-D28k was crystallized at 291 K using PEG 3350 as precipitant and a 2.4 A resolution X-ray data set was collected from a single flash-cooled crystal (100 K). The crystal belonged to space group C2, with unit-cell parameters a = 108.1, b = 28.2, c = 70.6 A, beta = 107.8 degrees . The presence of one molecule per asymmetric unit is presumed, corresponding to a Matthews coefficient of 1.75 A(3) Da(-1).

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Year:  2008        PMID: 18259068      PMCID: PMC2374171          DOI: 10.1107/S1744309108001905

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Calbindin D28k targets myo-inositol monophosphatase in spines and dendrites of cerebellar Purkinje neurons.

Authors:  Hartmut Schmidt; Beat Schwaller; Jens Eilers
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

2.  Structure, binding interface and hydrophobic transitions of Ca2+-loaded calbindin-D(28K).

Authors:  Douglas J Kojetin; Ronald A Venters; David R Kordys; Richele J Thompson; Rajiv Kumar; John Cavanagh
Journal:  Nat Struct Mol Biol       Date:  2006-06-25       Impact factor: 15.369

3.  Peptide binding proclivities of calcium loaded calbindin-D28k.

Authors:  David R Kordys; Benjamin G Bobay; Richele J Thompson; Ronald A Venters; John Cavanagh
Journal:  FEBS Lett       Date:  2007-09-11       Impact factor: 4.124

4.  Calbindin D28K interacts with Ran-binding protein M: identification of interacting domains by NMR spectroscopy.

Authors:  Ward Lutz; Elena M Frank; Theodore A Craig; Richele Thompson; Ronald A Venters; Doug Kojetin; John Cavanagh; Rajiv Kumar
Journal:  Biochem Biophys Res Commun       Date:  2003-04-18       Impact factor: 3.575

5.  Expression of calbindin-D(28k) in a pancreatic islet beta-cell line protects against cytokine-induced apoptosis and necrosis.

Authors:  A Rabinovitch; W L Suarez-Pinzon; K Sooy; K Strynadka; S Christakos
Journal:  Endocrinology       Date:  2001-08       Impact factor: 4.736

6.  Redox sensitive cysteine residues in calbindin D28k are structurally and functionally important.

Authors:  Tommy Cedervall; Tord Berggård; Valerie Borek; Eva Thulin; Sara Linse; Karin S Akerfeldt
Journal:  Biochemistry       Date:  2005-01-18       Impact factor: 3.162

7.  Deamidation and disulfide bridge formation in human calbindin D28k with effects on calcium binding.

Authors:  Christophe Vanbelle; Frédéric Halgand; Tommy Cedervall; Eva Thulin; Karin S Akerfeldt; Olivier Laprévote; Sara Linse
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

8.  Mechanism of S-nitrosation of recombinant human brain calbindin D28K.

Authors:  Limei Tao; Ann M English
Journal:  Biochemistry       Date:  2003-03-25       Impact factor: 3.162

9.  Biological actions and mechanism of action of calbindin in the process of apoptosis.

Authors:  Sylvia Christakos; Yan Liu
Journal:  J Steroid Biochem Mol Biol       Date:  2004-05       Impact factor: 4.292

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  2 in total

1.  X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.

Authors:  Eduard Bitto; Craig A Bingman; Lenka Bittova; Ronnie O Frederick; Brian G Fox; George N Phillips
Journal:  Proteins       Date:  2009-08-01

2.  The X-ray structure of human calbindin-D28K: an improved model.

Authors:  James W Noble; Rehab Almalki; S Mark Roe; Armin Wagner; Ramona Duman; John R Atack
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-10-02       Impact factor: 7.652

  2 in total

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