Literature DB >> 18259064

Crystallization and preliminary X-ray characterization of queD from Bacillus subtilis, an enzyme involved in queuosine biosynthesis.

Nenad Cicmil1, Lu Shi.   

Abstract

QueD (previously named ykvK) is one of several enzymes involved in the biosynthesis of the hypermodified nucleoside queuosine. Queuosine is incorporated into tRNA at position 34 of four tRNAs: tRNA(His), tRNA(Asp), tRNA(Asn) and tRNA(Tyr). The crystallization and preliminary X-ray crystallographic studies of queD are described here. The recombinant protein from Bacillus subtilis was overproduced in Escherichia coli and crystallized using the hanging-drop vapor-diffusion method from 25% PEG 600, 100 mM NaCl and sodium citrate buffer pH 5.5 at 291 K. The crystals diffract to 3.6 A resolution and belong to the cubic space group F4(1)32, with unit-cell parameter a = 240.88 A.

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Year:  2008        PMID: 18259064      PMCID: PMC2374184          DOI: 10.1107/S1744309108000924

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 2.  Queuosine modification of tRNA: a case for convergent evolution.

Authors:  R C Morris; M S Elliott
Journal:  Mol Genet Metab       Date:  2001 Sep-Oct       Impact factor: 4.797

3.  Specific changes in Q-ribonucleoside containing transfer RNA species during Friend leukemia cell erythroid differentiation.

Authors:  V K Lin; W R Farkas; P F Agris
Journal:  Nucleic Acids Res       Date:  1980-08-11       Impact factor: 16.971

4.  Biosynthesis of the modified nucleoside Q in transfer RNA.

Authors:  Y Kuchino; H Kasai; K Nihei; S Nishimura
Journal:  Nucleic Acids Res       Date:  1976-02       Impact factor: 16.971

5.  Identification of four genes necessary for biosynthesis of the modified nucleoside queuosine.

Authors:  John S Reader; David Metzgar; Paul Schimmel; Valérie de Crécy-Lagard
Journal:  J Biol Chem       Date:  2003-12-02       Impact factor: 5.157

6.  Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate.

Authors:  Wei Xie; Xianjun Liu; Raven H Huang
Journal:  Nat Struct Biol       Date:  2003-08-31

7.  Administration of exogenous queuine is essential for the biosynthesis of the queuosine-containing transfer RNAs in the mouse.

Authors:  J P Reyniers; J R Pleasants; B S Wostmann; J R Katze; W R Farkas
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

Review 8.  Biosynthesis of the 7-deazaguanosine hypermodified nucleosides of transfer RNA.

Authors:  Dirk Iwata-Reuyl
Journal:  Bioorg Chem       Date:  2003-02       Impact factor: 5.275

9.  Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase. Function and biosynthesis of queuosine in tRNA.

Authors:  S Noguchi; Y Nishimura; Y Hirota; S Nishimura
Journal:  J Biol Chem       Date:  1982-06-10       Impact factor: 5.157

10.  Effect of diet on the queuosine family of tRNAs of germ-free mice.

Authors:  W R Farkas
Journal:  J Biol Chem       Date:  1980-07-25       Impact factor: 5.157

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