Literature DB >> 12697167

Biosynthesis of the 7-deazaguanosine hypermodified nucleosides of transfer RNA.

Dirk Iwata-Reuyl1.   

Abstract

Transfer RNA (tRNA) is structurally unique among nucleic acids in harboring an astonishing diversity of post-transcriptionally modified nucleoside. Two of the most radically modified nucleosides known to occur in tRNA are queuosine and archaeosine, both of which are characterized by a 7-deazaguanosine core structure. In spite of the phylogenetic segregation observed for these nucleosides (queuosine is present in Eukarya and Bacteria, while archaeosine is present only in Archaea), their structural similarity suggested a common biosynthetic origin, and recent biochemical and genetic studies have provided compelling evidence that a significant portion of their biosynthesis may in fact be identical. This review covers current understanding of the physiology and biosynthesis of these remarkable nucleosides, with particular emphasis on the only two enzymes that have been discovered in the pathways: tRNA-guanine transglycosylase (TGT), which catalyzes the insertion of a modified base into the polynucleotide with the concomitant elimination of the genetically encoded guanine in the biosynthesis of both nucleosides, and S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA), which catalyzes the penultimate step in the biosynthesis of queuosine, the construction of the carbocyclic side chain.

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Year:  2003        PMID: 12697167     DOI: 10.1016/s0045-2068(02)00513-8

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  52 in total

1.  A truncated aminoacyl-tRNA synthetase modifies RNA.

Authors:  Juan C Salazar; Alexandre Ambrogelly; Pamela F Crain; James A McCloskey; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

2.  Role of aspartate 143 in Escherichia coli tRNA-guanine transglycosylase: alteration of heterocyclic substrate specificity.

Authors:  Katherine Abold Todorov; George A Garcia
Journal:  Biochemistry       Date:  2006-01-17       Impact factor: 3.162

3.  High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism.

Authors:  Youngchang Kim; Min Zhou; Shiu Moy; Jennifer Morales; Mark A Cunningham; Andrzej Joachimiak
Journal:  J Mol Biol       Date:  2010-09-25       Impact factor: 5.469

4.  Glutamate versus glutamine exchange swaps substrate selectivity in tRNA-guanine transglycosylase: insight into the regulation of substrate selectivity by kinetic and crystallographic studies.

Authors:  Naomi Tidten; Bernhard Stengl; Andreas Heine; George A Garcia; Gerhard Klebe; Klaus Reuter
Journal:  J Mol Biol       Date:  2007-10-22       Impact factor: 5.469

Review 5.  An embarrassment of riches: the enzymology of RNA modification.

Authors:  Dirk Iwata-Reuyl
Journal:  Curr Opin Chem Biol       Date:  2008-03-14       Impact factor: 8.822

6.  The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain.

Authors:  Robert C Spitale; Andrew T Torelli; Jolanta Krucinska; Vahe Bandarian; Joseph E Wedekind
Journal:  J Biol Chem       Date:  2009-03-04       Impact factor: 5.157

7.  Discovery and characterization of an amidinotransferase involved in the modification of archaeal tRNA.

Authors:  Gabriela Phillips; Vimbai M Chikwana; Adrienne Maxwell; Basma El-Yacoubi; Manal A Swairjo; Dirk Iwata-Reuyl; Valérie de Crécy-Lagard
Journal:  J Biol Chem       Date:  2010-02-03       Impact factor: 5.157

8.  Diet-dependent depletion of queuosine in tRNAs in Caenorhabditis elegans does not lead to a developmental block.

Authors:  Rahul Gaur; Glenn R Björk; Simon Tuck; Umesh Varshney
Journal:  J Biosci       Date:  2007-06       Impact factor: 1.826

9.  Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase.

Authors:  Daniel J Klein; Thomas E Edwards; Adrian R Ferré-D'Amaré
Journal:  Nat Struct Mol Biol       Date:  2009-02-22       Impact factor: 15.369

10.  Kinetic Analysis and Probing with Substrate Analogues of the Reaction Pathway of the Nitrile Reductase QueF from Escherichia coli.

Authors:  Jihye Jung; Tibor Czabany; Birgit Wilding; Norbert Klempier; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2016-10-17       Impact factor: 5.157

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