Literature DB >> 18259057

Purification, crystallization and preliminary crystallographic analysis of the non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304.

Pazilat Bahti1, Shunmei Chen, Yang Li, Neil Shaw, Xuejun Zhang, Min Zhang, Chongyun Cheng, Gaojie Song, Jie Yin, Hua Zhang, Dongsheng Che, Abdulla Abbas, Hao Xu, Bi Cheng Wang, Zhi Jie Liu.   

Abstract

A 10.5 kDa non-Pfam hypothetical protein, AF1514, from the hyperthermophilic archaeon Archeoglobus fulgidus has been overexpressed in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method. The crystals diffracted X-rays to 2.09 A resolution and a data set was collected at 100 K using Cu K alpha radiation from a rotating-anode X-ray source. The crystals belong to space group P4(1)2(1)2 or P4(3)2(1)2, with unit-cell parameters a = b = 49.27, c = 106.61 A. The calculated Matthews coefficient was 3.16 A(3) Da(-1), suggesting the presence of one molecule in the asymmetric unit.

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Year:  2008        PMID: 18259057      PMCID: PMC2374175          DOI: 10.1107/S1744309107068649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

Review 1.  Biological function made crystal clear - annotation of hypothetical proteins via structural genomics.

Authors:  E Eisenstein; G L Gilliland; O Herzberg; J Moult; J Orban; R J Poljak; L Banerjei; D Richardson; A J Howard
Journal:  Curr Opin Biotechnol       Date:  2000-02       Impact factor: 9.740

Review 2.  'Conserved hypothetical' proteins: prioritization of targets for experimental study.

Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2004-10-12       Impact factor: 16.971

Review 3.  Searching for hypothetical proteins: theory and practice based upon original data and literature.

Authors:  Gert Lubec; Leila Afjehi-Sadat; Jae-Won Yang; Julius Paul Pradeep John
Journal:  Prog Neurobiol       Date:  2005-11-04       Impact factor: 11.685

4.  Crystal structures of tyrosyl-tRNA synthetases from Archaea.

Authors:  Mitsuo Kuratani; Hiroaki Sakai; Masahiro Takahashi; Tatsuo Yanagisawa; Takatsugu Kobayashi; Kazutaka Murayama; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Chizu Kuroishi; Seiki Kuramitsu; Takaho Terada; Yoshitaka Bessho; Mikako Shirouzu; Shun-ichi Sekine; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2005-11-14       Impact factor: 5.469

5.  Isolation of extremely thermophilic sulfate reducers: evidence for a novel branch of archaebacteria.

Authors:  K O Stetter; G Lauerer; M Thomm; A Neuner
Journal:  Science       Date:  1987-05-15       Impact factor: 47.728

6.  Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus.

Authors:  Lari Lehtiö; J Günter Grossmann; Bashkim Kokona; Robert Fairman; Adrian Goldman
Journal:  J Mol Biol       Date:  2006-01-03       Impact factor: 5.469

7.  Crystal structures of a novel ferric reductase from the hyperthermophilic archaeon Archaeoglobus fulgidus and its complex with NADP+.

Authors:  H J Chiu; E Johnson; I Schröder; D C Rees
Journal:  Structure       Date:  2001-04-04       Impact factor: 5.006

8.  The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.

Authors:  H P Klenk; R A Clayton; J F Tomb; O White; K E Nelson; K A Ketchum; R J Dodson; M Gwinn; E K Hickey; J D Peterson; D L Richardson; A R Kerlavage; D E Graham; N C Kyrpides; R D Fleischmann; J Quackenbush; N H Lee; G G Sutton; S Gill; E F Kirkness; B A Dougherty; K McKenney; M D Adams; B Loftus; S Peterson; C I Reich; L K McNeil; J H Badger; A Glodek; L Zhou; R Overbeek; J D Gocayne; J F Weidman; L McDonald; T Utterback; M D Cotton; T Spriggs; P Artiach; B P Kaine; S M Sykes; P W Sadow; K P D'Andrea; C Bowman; C Fujii; S A Garland; T M Mason; G J Olsen; C M Fraser; H O Smith; C R Woese; J C Venter
Journal:  Nature       Date:  1997-11-27       Impact factor: 49.962

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Conserved 'hypothetical' proteins: new hints and new puzzles.

Authors:  M Y Galperin
Journal:  Comp Funct Genomics       Date:  2001
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