Literature DB >> 10679350

Biological function made crystal clear - annotation of hypothetical proteins via structural genomics.

E Eisenstein1, G L Gilliland, O Herzberg, J Moult, J Orban, R J Poljak, L Banerjei, D Richardson, A J Howard.   

Abstract

Many of the gene products of completely sequenced organisms are 'hypothetical' - they cannot be related to any previously characterized proteins - and so are of completely unknown function. Structural studies provide one means of obtaining functional information in these cases. A 'structural genomics' project has been initiated aimed at determining the structures of 50 hypothetical proteins from Haemophilus influenzae to gain an understanding of their function. Each stage of the project - target selection, protein production, crystallization, structure determination, and structure analysis - makes use of recent advances to streamline procedures. Early results from this and similar projects are encouraging in that some level of functional understanding can be deduced from experimentally solved structures.

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Year:  2000        PMID: 10679350     DOI: 10.1016/s0958-1669(99)00063-4

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  35 in total

1.  Links from genome proteins to known 3-D structures.

Authors:  Y Wang; S Bryant; R Tatusov; T Tatusova
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

Review 2.  Molecular biologist's guide to proteomics.

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Journal:  Microbiol Mol Biol Rev       Date:  2002-03       Impact factor: 11.056

3.  Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.

Authors:  H Hegyi; M Gerstein
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

4.  Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome.

Authors:  S Balasubramanian; T Schneider; M Gerstein; L Regan
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

5.  Future directions in protein function prediction.

Authors:  Ihsan A Shehadi; Huyuan Yang; Mary Jo Ondrechen
Journal:  Mol Biol Rep       Date:  2002-12       Impact factor: 2.316

6.  Role for NMR in structural genomics.

Authors:  Michael A Kennedy; Gaetano T Montelione; Cheryl H Arrowsmith; John L Markley
Journal:  J Struct Funct Genomics       Date:  2002

7.  Expression screening, protein purification and NMR analysis of human protein domains for structural genomics.

Authors:  G E Folkers; B N M van Buuren; R Kaptein
Journal:  J Struct Funct Genomics       Date:  2004

8.  NMR assignment of the hypothetical protein HI0004 from Haemophilus influenzae--a putative essential gene product.

Authors:  Deok Cheon Yeh; James F Parsons; Lisa M Parsons; Fang Liu; Edward Eisenstein; John Orban
Journal:  J Biomol NMR       Date:  2004-05       Impact factor: 2.835

9.  NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog.

Authors:  Deok Cheon Yeh; Lisa M Parsons; James F Parsons; Fang Liu; Edward Eisenstein; John Orban
Journal:  Protein Sci       Date:  2005-01-04       Impact factor: 6.725

10.  Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.

Authors:  Alexey Teplyakov; Galina Obmolova; Elif Sarikaya; Sadhana Pullalarevu; Wojciech Krajewski; Andrey Galkin; Andrew J Howard; Osnat Herzberg; Gary L Gilliland
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

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