Literature DB >> 18257570

Probing structure in invisible protein states with anisotropic NMR chemical shifts.

Pramodh Vallurupalli1, D Flemming Hansen, Lewis E Kay.   

Abstract

A general method for obtaining quantitative structural information on invisible, excited protein states by solution-based NMR spectroscopy is presented. The approach exploits relaxation dispersion techniques in which changes in chemical shifts between ground and excited states are monitored in solutions with and without small amounts of residual molecular alignment. This allows the calculation of differences in chemical shifts induced by alignment that can be directly related to molecular structure, in cases where the orientation and magnitude of the chemical-shift tensor are well defined. An example using carbonyl chemical shifts as probes of a protein-ligand binding reaction is presented to illustrate and validate the method.

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Year:  2008        PMID: 18257570     DOI: 10.1021/ja710817g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  Transiently populated intermediate functions as a branching point of the FF domain folding pathway.

Authors:  Dmitry M Korzhnev; Tomasz L Religa; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-30       Impact factor: 11.205

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states.

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-06-24       Impact factor: 2.835

4.  Slight mistuning of a cryogenic probe significantly perturbs the water 1H precession frequency.

Authors:  Dennis A Torchia
Journal:  J Biomol NMR       Date:  2009-08-08       Impact factor: 2.835

Review 5.  NMR spectroscopy brings invisible protein states into focus.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

Review 6.  Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation.

Authors:  G Marius Clore
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

7.  A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy.

Authors:  Mathias A S Hass; Wei-Min Liu; Roman V Agafonov; Renee Otten; Lien A Phung; Jesika T Schilder; Dorothee Kern; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2015-01-08       Impact factor: 2.835

Review 8.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

9.  Measuring 13Cbeta chemical shifts of invisible excited states in proteins by relaxation dispersion NMR spectroscopy.

Authors:  Patrik Lundström; Hong Lin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-05-16       Impact factor: 2.835

10.  Dynamics on multiple timescales in the RNA-directed RNA polymerase from the cystovirus phi6.

Authors:  Zhen Ren; Hsin Wang; Ranajeet Ghose
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

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