Literature DB >> 18256169

Using complicated, wide dynamic range driving to develop models of single neurons in single recording sessions.

Kevin H Hobbs1, Scott L Hooper.   

Abstract

Neuron models are typically built by measuring individually, for each membrane conductance, its parameters (e.g., half-maximal voltages) and maximal conductance value (g(max)). However, neurons have extended morphologies with nonuniform conductance distributions, whereas models generally contain at most a few compartments. Both the original conductance measurements and the models therefore unavoidably contain error due to the electrical filtering of neurons and the differential placement of conductances on them. Model parameters (typically g(max) values) are therefore generally altered by hand or brute force to match model and neuron activity. We propose an alternative method in which complicated, rapidly changing driving input is used to optimize model parameters. This method also ensures that neuron and model dynamics match across a wide dynamic range, a test not performed in most modeling. We tested this concept using leech heartbeat and generic tonically firing models and lobster stomatogastric and generic bursting models as targets and g(max) values as optimized parameters. In all four cases optimization solutions excellently matched target activity. Complicated, wide dynamic range driving thus appears to be an excellent method to characterize neuron properties in detail and to build highly accurate models. In these completely defined targets, the method found each target's 8-13 g(max) values with high accuracy, and may therefore also provide an alternative, functionally based method of defining neuron g(max) values. The method uses only standard experimental and computational techniques, could be easily extended to optimize conductance parameters other than g(max), and should be readily applicable to real neurons.

Entities:  

Mesh:

Year:  2008        PMID: 18256169     DOI: 10.1152/jn.00032.2008

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  20 in total

1.  Multiple models to capture the variability in biological neurons and networks.

Authors:  Eve Marder; Adam L Taylor
Journal:  Nat Neurosci       Date:  2011-02       Impact factor: 24.884

2.  Efficient fitting of conductance-based model neurons from somatic current clamp.

Authors:  Nathan F Lepora; Paul G Overton; Kevin Gurney
Journal:  J Comput Neurosci       Date:  2011-05-25       Impact factor: 1.621

3.  Models of electrical activity: calibration and prediction testing on the same cell.

Authors:  Maurizio Tomaiuolo; Richard Bertram; Gareth Leng; Joël Tabak
Journal:  Biophys J       Date:  2012-11-07       Impact factor: 4.033

4.  Inactivating ion channels augment robustness of subthreshold intrinsic response dynamics to parametric variability in hippocampal model neurons.

Authors:  Rahul Kumar Rathour; Rishikesh Narayanan
Journal:  J Physiol       Date:  2012-08-28       Impact factor: 5.182

5.  Automatic parameter estimation of multicompartmental neuron models via minimization of trace error with control adjustment.

Authors:  Ted Brookings; Marie L Goeritz; Eve Marder
Journal:  J Neurophysiol       Date:  2014-07-09       Impact factor: 2.714

6.  Differential roles of two delayed rectifier potassium currents in regulation of ventricular action potential duration and arrhythmia susceptibility.

Authors:  Ryan A Devenyi; Francis A Ortega; Willemijn Groenendaal; Trine Krogh-Madsen; David J Christini; Eric A Sobie
Journal:  J Physiol       Date:  2016-12-28       Impact factor: 5.182

7.  Balanced plasticity and stability of the electrical properties of a molluscan modulatory interneuron after classical conditioning: a computational study.

Authors:  Dimitris V Vavoulis; Eugeny S Nikitin; Ildikó Kemenes; Vincenzo Marra; Jianfeng Feng; Paul R Benjamin; György Kemenes
Journal:  Front Behav Neurosci       Date:  2010-05-05       Impact factor: 3.558

8.  How multiple conductances determine electrophysiological properties in a multicompartment model.

Authors:  Adam L Taylor; Jean-Marc Goaillard; Eve Marder
Journal:  J Neurosci       Date:  2009-04-29       Impact factor: 6.167

Review 9.  The integrative role of the sigh in psychology, physiology, pathology, and neurobiology.

Authors:  Jan-Marino Ramirez
Journal:  Prog Brain Res       Date:  2014       Impact factor: 2.453

Review 10.  Degeneracy in hippocampal physiology and plasticity.

Authors:  Rahul K Rathour; Rishikesh Narayanan
Journal:  Hippocampus       Date:  2019-07-13       Impact factor: 3.899

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