Literature DB >> 21270780

Multiple models to capture the variability in biological neurons and networks.

Eve Marder1, Adam L Taylor.   

Abstract

How tightly tuned are the synaptic and intrinsic properties that give rise to neuron and circuit function? Experimental work shows that these properties vary considerably across identified neurons in different animals. Given this variability in experimental data, this review describes some of the complications of building computational models to aid in understanding how system dynamics arise from the interaction of system components. We argue that instead of trying to build a single model that captures the generic behavior of a neuron or circuit, it is beneficial to construct a population of models that captures the behavior of the population that provided the experimental data. Studying a population of models with different underlying structure and similar behaviors provides opportunities to discover unsuspected compensatory mechanisms that contribute to neuron and network function.

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Year:  2011        PMID: 21270780      PMCID: PMC3686573          DOI: 10.1038/nn.2735

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  48 in total

1.  Global structure, robustness, and modulation of neuronal models.

Authors:  M S Goldman; J Golowasch; E Marder; L F Abbott
Journal:  J Neurosci       Date:  2001-07-15       Impact factor: 6.167

2.  Failure of averaging in the construction of a conductance-based neuron model.

Authors:  Jorge Golowasch; Mark S Goldman; L F Abbott; Eve Marder
Journal:  J Neurophysiol       Date:  2002-02       Impact factor: 2.714

3.  Detailed model of intersegmental coordination in the timing network of the leech heartbeat central pattern generator.

Authors:  Sami H Jezzini; Andrew A V Hill; Pavlo Kuzyk; Ronald L Calabrese
Journal:  J Neurophysiol       Date:  2003-10-22       Impact factor: 2.714

4.  Activity-independent homeostasis in rhythmically active neurons.

Authors:  Jason N MacLean; Ying Zhang; Bruce R Johnson; Ronald M Harris-Warrick
Journal:  Neuron       Date:  2003-01-09       Impact factor: 17.173

5.  From molecular noise to behavioural variability in a single bacterium.

Authors:  Ekaterina Korobkova; Thierry Emonet; Jose M G Vilar; Thomas S Shimizu; Philippe Cluzel
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

6.  A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances.

Authors:  R D Traub; R K Wong; R Miles; H Michelson
Journal:  J Neurophysiol       Date:  1991-08       Impact factor: 2.714

7.  Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons.

Authors:  Astrid A Prinz; Cyrus P Billimoria; Eve Marder
Journal:  J Neurophysiol       Date:  2003-08-27       Impact factor: 2.714

8.  Activity-dependent regulation of conductances in model neurons.

Authors:  G LeMasson; E Marder; L F Abbott
Journal:  Science       Date:  1993-03-26       Impact factor: 47.728

9.  Conductance ratios and cellular identity.

Authors:  Amber E Hudson; Astrid A Prinz
Journal:  PLoS Comput Biol       Date:  2010-07-01       Impact factor: 4.475

10.  Neural repetitive firing: modifications of the Hodgkin-Huxley axon suggested by experimental results from crustacean axons.

Authors:  J A Connor; D Walter; R McKown
Journal:  Biophys J       Date:  1977-04       Impact factor: 4.033

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  169 in total

1.  Related neuropeptides use different balances of unitary mechanisms to modulate the cardiac neuromuscular system in the American lobster, Homarus americanus.

Authors:  Patsy S Dickinson; Andrew Calkins; Jake S Stevens
Journal:  J Neurophysiol       Date:  2014-11-12       Impact factor: 2.714

2.  Animal-to-animal variability of connection strength in the leech heartbeat central pattern generator.

Authors:  Rebecca C Roffman; Brian J Norris; Ronald L Calabrese
Journal:  J Neurophysiol       Date:  2011-12-21       Impact factor: 2.714

Review 3.  Exploiting mathematical models to illuminate electrophysiological variability between individuals.

Authors:  Amrita X Sarkar; David J Christini; Eric A Sobie
Journal:  J Physiol       Date:  2012-04-10       Impact factor: 5.182

Review 4.  From the connectome to brain function.

Authors:  Cornelia I Bargmann; Eve Marder
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

5.  The neuromuscular transform of the lobster cardiac system explains the opposing effects of a neuromodulator on muscle output.

Authors:  Alex H Williams; Andrew Calkins; Timothy O'Leary; Renee Symonds; Eve Marder; Patsy S Dickinson
Journal:  J Neurosci       Date:  2013-10-16       Impact factor: 6.167

6.  Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems.

Authors:  Kunling Geng; Vasilis Z Marmarelis
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2016-06-24       Impact factor: 10.451

Review 7.  Neuronal homeostasis: time for a change?

Authors:  Timothy O'Leary; David J A Wyllie
Journal:  J Physiol       Date:  2011-08-08       Impact factor: 5.182

8.  Tonic dopamine induces persistent changes in the transient potassium current through translational regulation.

Authors:  Edmund W Rodgers; Wulf-Dieter C Krenz; Deborah J Baro
Journal:  J Neurosci       Date:  2011-09-14       Impact factor: 6.167

9.  Lack of reliability in the disruption of cognitive performance following exposure to protons.

Authors:  Bernard M Rabin; Nicholas A Heroux; Barbara Shukitt-Hale; Kirsty L Carrihill-Knoll; Zachary Beck; Chelsea Baxter
Journal:  Radiat Environ Biophys       Date:  2015-05-03       Impact factor: 1.925

Review 10.  Facing the challenge of mammalian neural microcircuits: taking a few breaths may help.

Authors:  Jack L Feldman; Kaiwen Kam
Journal:  J Physiol       Date:  2015-01-01       Impact factor: 5.182

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