Literature DB >> 18254956

DNA sequence variants in the LOXL1 gene are associated with pseudoexfoliation glaucoma in a U.S. clinic-based population with broad ethnic diversity.

Bao Jian Fan1, Louis Pasquale, Cynthia L Grosskreutz, Douglas Rhee, Teresa Chen, Margaret M DeAngelis, Ivana Kim, Elizabeth del Bono, Joan W Miller, Tiansen Li, Jonathan L Haines, Janey L Wiggs.   

Abstract

BACKGROUND: Pseudoexfoliation syndrome is a major risk factor for glaucoma in many populations throughout the world. Using a U.S. clinic-based case control sample with broad ethnic diversity, we show that three common SNPs in LOXL1 previously associated with pseudoexfoliation in Nordic populations are significantly associated with pseudoexfoliation syndrome and pseudoexfoliation glaucoma.
METHODS: Three LOXL1 SNPs were genotyped in a patient sample (206 pseudoexfoliation, 331 primary open angle glaucoma, and 88 controls) from the Glaucoma Consultation Service at the Massachusetts Eye and Ear Infirmary. The SNPs were evaluation for association with pseudeoexfoliation syndrome, pseudoexfoliation glaucoma, and primary open angle glaucoma.
RESULTS: The strongest association was found for the G allele of marker rs3825942 (G153D) with a frequency of 99% in pseudoexfoliation patients (with and without glaucoma) compared with 79% in controls (p = 1.6 x 10-15; OR = 20.93, 95%CI: 8.06, 54.39). The homozygous GG genotype is also associated with pseudoexfoliation when compared to controls (p = 1.2 x 10-12; OR = 23.57, 95%CI: 7.95, 69.85). None of the SNPs were significantly associated with primary open angle glaucoma.
CONCLUSION: The pseudoexfoliation syndrome is a common cause of glaucoma. These results indicate that the G153D LOXL1 variant is significantly associated with an increased risk of pseudoexfoliation and pseudoexfoliation glaucoma in an ethnically diverse patient population from the Northeastern United States. Given the high prevalence of pseudooexfoliation in this geographic region, these results also indicate that the G153D LOXL1 variant is a significant risk factor for adult-onset glaucoma in this clinic based population.

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Year:  2008        PMID: 18254956      PMCID: PMC2270804          DOI: 10.1186/1471-2350-9-5

Source DB:  PubMed          Journal:  BMC Med Genet        ISSN: 1471-2350            Impact factor:   2.103


  38 in total

1.  Genome-wide scan for adult onset primary open angle glaucoma.

Authors:  J L Wiggs; R R Allingham; A Hossain; J Kern; J Auguste; E A DelBono; B Broomer; F L Graham; M Hauser; M Pericak-Vance; J L Haines
Journal:  Hum Mol Genet       Date:  2000-04-12       Impact factor: 6.150

2.  Adult-onset primary open-angle glaucoma caused by mutations in optineurin.

Authors:  Tayebeh Rezaie; Anne Child; Roger Hitchings; Glen Brice; Lauri Miller; Miguel Coca-Prados; Elise Héon; Theodore Krupin; Robert Ritch; Donald Kreutzer; R Pitts Crick; Mansoor Sarfarazi
Journal:  Science       Date:  2002-02-08       Impact factor: 47.728

3.  Immunohistochemical localization of basement membrane components in pseudoexfoliation material of the lens capsule.

Authors:  U Schlötzer-Schrehardt; S Dörfler; G O Naumann
Journal:  Curr Eye Res       Date:  1992-04       Impact factor: 2.424

4.  Pseudoexfoliation syndrome in Icelandic families.

Authors:  R R Allingham; M Loftsdottir; M S Gottfredsdottir; E Thorgeirsson; F Jonasson; T Sverisson; W G Hodge; K F Damji; E Stefánsson
Journal:  Br J Ophthalmol       Date:  2001-06       Impact factor: 4.638

5.  A genome-wide scan for primary open-angle glaucoma (POAG): the Barbados Family Study of Open-Angle Glaucoma.

Authors:  Barbara Nemesure; Xiaodong Jiao; Qimei He; M Cristina Leske; Suh-Yuh Wu; Anselm Hennis; Nancy Mendell; Joy Redman; Henri-Jean Garchon; Richa Agarwala; Alejandro A Schäffer; Fielding Hejtmancik
Journal:  Hum Genet       Date:  2003-03-04       Impact factor: 4.132

6.  A genomewide scan identifies novel early-onset primary open-angle glaucoma loci on 9q22 and 20p12.

Authors:  J L Wiggs; S Lynch; G Ynagi; M Maselli; J Auguste; E A Del Bono; L M Olson; J L Haines
Journal:  Am J Hum Genet       Date:  2004-04-23       Impact factor: 11.025

7.  Ancestral LOXL1 variants are associated with pseudoexfoliation in Caucasian Australians but with markedly lower penetrance than in Nordic people.

Authors:  Alex W Hewitt; Shiwani Sharma; Kathryn P Burdon; Jie Jin Wang; Paul N Baird; David P Dimasi; David A Mackey; Paul Mitchell; Jamie E Craig
Journal:  Hum Mol Genet       Date:  2007-11-23       Impact factor: 6.150

8.  Prevalence of open-angle glaucoma in Iceland: Reykjavik Eye Study.

Authors:  F Jonasson; K F Damji; A Arnarsson; T Sverrisson; L Wang; H Sasaki; K Sasaki
Journal:  Eye (Lond)       Date:  2003-08       Impact factor: 3.775

9.  Elastic fiber homeostasis requires lysyl oxidase-like 1 protein.

Authors:  Xiaoqing Liu; Yun Zhao; Jiangang Gao; Basil Pawlyk; Barry Starcher; Jeffrey A Spencer; Hiromi Yanagisawa; Jian Zuo; Tiansen Li
Journal:  Nat Genet       Date:  2004-01-25       Impact factor: 38.330

Review 10.  Myocilin glaucoma.

Authors:  John H Fingert; Edwin M Stone; Val C Sheffield; Wallace L M Alward
Journal:  Surv Ophthalmol       Date:  2002 Nov-Dec       Impact factor: 6.048

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  57 in total

1.  Lack of association between LOXL1 gene polymorphisms and primary open angle glaucoma in the Saudi Arabian population.

Authors:  Khaled K Abu-Amero; Essam A Osman; Mohammad T Azad; R Rand Allingham; Michael A Hauser; Saleh A Al-Obeidan
Journal:  Ophthalmic Genet       Date:  2011-04-21       Impact factor: 1.803

Review 2.  Association of clusterin (CLU) variants and exfoliation syndrome: An analysis in two Caucasian studies and a meta-analysis.

Authors:  Bao J Fan; Louis R Pasquale; Jae H Kang; Hani Levkovitch-Verbin; Jonathan L Haines; Janey L Wiggs
Journal:  Exp Eye Res       Date:  2015-08-10       Impact factor: 3.467

Review 3.  Glaucoma genetics.

Authors:  Pratap Challa
Journal:  Int Ophthalmol Clin       Date:  2008

4.  Three susceptible loci associated with primary open-angle glaucoma identified by genome-wide association study in a Japanese population.

Authors:  Masakazu Nakano; Yoko Ikeda; Takazumi Taniguchi; Tomohito Yagi; Masahiro Fuwa; Natsue Omi; Yuichi Tokuda; Masami Tanaka; Kengo Yoshii; Masaaki Kageyama; Shigeta Naruse; Akira Matsuda; Kazuhiko Mori; Shigeru Kinoshita; Kei Tashiro
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-22       Impact factor: 11.205

5.  Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma.

Authors:  Haoyu Chen; Li Jia Chen; Mingzhi Zhang; Weifeng Gong; Pancy Oi Sin Tam; Dennis Shun Chiu Lam; Chi Pui Pang
Journal:  Mol Vis       Date:  2010-02-06       Impact factor: 2.367

Review 6.  Exfoliation Syndrome: A Disease of Autophagy and LOXL1 Proteopathy.

Authors:  Audrey M Bernstein; Robert Ritch; Jose M Wolosin
Journal:  J Glaucoma       Date:  2018-07       Impact factor: 2.503

7.  Major LOXL1 risk allele is reversed in exfoliation glaucoma in a black South African population.

Authors:  Susan E I Williams; Benjamin T Whigham; Yutao Liu; Trevor R Carmichael; Xuejun Qin; Silke Schmidt; Michele Ramsay; Michael A Hauser; R Rand Allingham
Journal:  Mol Vis       Date:  2010-04-21       Impact factor: 2.367

8.  Role of functional single nucleotide polymorphisms of MMP1, MMP2, and MMP9 in open angle glaucomas.

Authors:  Georg Mossböck; Martin Weger; Christoph Faschinger; Christine Zimmermann; Otto Schmut; Wilfried Renner; Yosuf El-Shabrawi
Journal:  Mol Vis       Date:  2010-08-28       Impact factor: 2.367

9.  LOXL1 expression in lens capsule tissue specimens from individuals with pseudoexfoliation syndrome and glaucoma.

Authors:  Tanya T Khan; Guorong Li; Iris D Navarro; Rama D Kastury; Carol J Zeil; Taras M Semchyshyn; Frank J Moya; David L Epstein; Pedro Gonzalez; Pratap Challa
Journal:  Mol Vis       Date:  2010-11-02       Impact factor: 2.367

10.  Evaluation of LOXL1 polymorphisms in exfoliation syndrome in a Chinese population.

Authors:  Ling Chen; Liyun Jia; Ningli Wang; Guangxian Tang; Chun Zhang; Sujie Fan; Wenru Liu; Hailin Meng; Wotan Zeng; Ningpu Liu; Huaizhou Wang; Hongyan Jia
Journal:  Mol Vis       Date:  2009-11-14       Impact factor: 2.367

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