Literature DB >> 18247136

Genome-wide identification of NBS resistance genes in Populus trichocarpa.

Annegret Kohler1, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, Frédéric Duchaussoy, Blake C Meyers, Wout Boerjan, Francis Martin.   

Abstract

As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of approximately 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.

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Year:  2008        PMID： 18247136     DOI： 10.1007/s11103-008-9293-9

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  42 in total

1.  Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily.

Authors:  B C Meyers; A W Dickerman; R W Michelmore; S Sivaramakrishnan; B W Sobral; N D Young
Journal:  Plant J       Date:  1999-11       Impact factor: 6.417

2.  Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements.

Authors:  M Lescot; S Rombauts; J Zhang; S Aubourg; C Mathé; S Jansson; P Rouzé; W Boerjan
Journal:  Theor Appl Genet       Date:  2004-04-14       Impact factor: 5.699

3.  Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis.

Authors:  L Noël; T L Moores; E A van Der Biezen; M Parniske; M J Daniels; J E Parker; J D Jones
Journal:  Plant Cell       Date:  1999-11       Impact factor: 11.277

4.  Nuclear accumulation of the Arabidopsis immune receptor RPS4 is necessary for triggering EDS1-dependent defense.

Authors:  Lennart Wirthmueller; Yan Zhang; Jonathan D G Jones; Jane E Parker
Journal:  Curr Biol       Date:  2007-11-08       Impact factor: 10.834

5.  Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.

Authors:  M T Cervera; V Storme; B Ivens; J Gusmão; B H Liu; V Hostyn; J Van Slycken; M Van Montagu; W Boerjan
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

6.  Motifs specific for the ADR1 NBS-LRR protein family in Arabidopsis are conserved among NBS-LRR sequences from both dicotyledonous and monocotyledonous plants.

Authors:  Andrea Chini; Gary J Loake
Journal:  Planta       Date:  2005-05-12       Impact factor: 4.116

7.  Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina.

Authors:  Cécile Rinaldi; Annegret Kohler; Pascal Frey; Frédéric Duchaussoy; Nathalie Ningre; Arnaud Couloux; Patrick Wincker; Didier Le Thiec; Silvia Fluch; Francis Martin; Sébastien Duplessis
Journal:  Plant Physiol       Date:  2007-03-30       Impact factor: 8.340

8.  Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection.

Authors:  V Jorge; A Dowkiw; P Faivre-Rampant; C Bastien
Journal:  New Phytol       Date:  2005-07       Impact factor: 10.151

9.  Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus.

Authors:  Laurent Deslandes; Jocelyne Olivier; Nemo Peeters; Dong Xin Feng; Manirath Khounlotham; Christian Boucher; Imre Somssich; Stephane Genin; Yves Marco
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-03       Impact factor: 11.205

10.  Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from western white pine ( Pinus monticola Dougl. ex. D. Don.).

Authors:  J-J Liu; A K M Ekramoddoullah
Journal:  Mol Genet Genomics       Date:  2003-10-28       Impact factor: 3.291
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  85 in total

1.  A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom.

Authors:  Jungeun Kim; Chan Ju Lim; Bong-Woo Lee; Jae-Pil Choi; Sang-Keun Oh; Raza Ahmad; Suk-Yoon Kwon; Jisook Ahn; Cheol-Goo Hur
Journal:  Mol Cells       Date:  2012-03-26       Impact factor: 5.034

2.  Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains.

Authors:  Erik Slootweg; Jan Roosien; Laurentiu N Spiridon; Andrei-Jose Petrescu; Wladimir Tameling; Matthieu Joosten; Rikus Pomp; Casper van Schaik; Robert Dees; Jan Willem Borst; Geert Smant; Arjen Schots; Jaap Bakker; Aska Goverse
Journal:  Plant Cell       Date:  2010-12-21       Impact factor: 11.277

3.  Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns.

Authors:  Zhu-Qing Shao; Jia-Yu Xue; Ping Wu; Yan-Mei Zhang; Yue Wu; Yue-Yu Hang; Bin Wang; Jian-Qun Chen
Journal:  Plant Physiol       Date:  2016-02-02       Impact factor: 8.340

4.  Functional identification and regulation of the PtDrl02 gene promoter from triploid white poplar.

Authors:  Huiquan Zheng; Shanzhi Lin; Qian Zhang; Yang Lei; Lu Hou; Zhiyi Zhang
Journal:  Plant Cell Rep       Date:  2010-02-24       Impact factor: 4.570

5.  Molecular analysis of a large subtelomeric nucleotide-binding-site-leucine-rich-repeat family in two representative genotypes of the major gene pools of Phaseolus vulgaris.

Authors:  Valérie Geffroy; Catherine Macadré; Perrine David; Andrea Pedrosa-Harand; Mireille Sévignac; Catherine Dauga; Thierry Langin
Journal:  Genetics       Date:  2008-12-15       Impact factor: 4.562

6.  Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar.

Authors:  Huiquan Zheng; Shanzhi Lin; Qian Zhang; Yang Lei; Zhiyi Zhang
Journal:  Mol Genet Genomics       Date:  2009-07-19       Impact factor: 3.291

7.  Evolution of the number of LRRs in plant disease resistance genes.

Authors:  Miho Tamura; Hidenori Tachida
Journal:  Mol Genet Genomics       Date:  2011-03-26       Impact factor: 3.291

8.  A nomadic subtelomeric disease resistance gene cluster in common bean.

Authors:  Perrine David; Nicolas W G Chen; Andrea Pedrosa-Harand; Vincent Thareau; Mireille Sévignac; Steven B Cannon; Daniel Debouck; Thierry Langin; Valérie Geffroy
Journal:  Plant Physiol       Date:  2009-09-23       Impact factor: 8.340

Review 9.  Plant STAND P-loop NTPases: a current perspective of genome distribution, evolution, and function : Plant STAND P-loop NTPases: genomic organization, evolution, and molecular mechanism models contribute broadly to plant pathogen defense.

Authors:  Preeti Arya; Vishal Acharya
Journal:  Mol Genet Genomics       Date:  2017-09-12       Impact factor: 3.291

10.  Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.

Authors:  Jeong-Hwan Mun; Hee-Ju Yu; Soomin Park; Beom-Seok Park
Journal:  Mol Genet Genomics       Date:  2009-10-17       Impact factor: 3.291
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