Literature DB >> 18245343

Dpb2p, a noncatalytic subunit of DNA polymerase epsilon, contributes to the fidelity of DNA replication in Saccharomyces cerevisiae.

Malgorzata Jaszczur1, Krzysztof Flis, Justyna Rudzka, Joanna Kraszewska, Martin E Budd, Piotr Polaczek, Judith L Campbell, Piotr Jonczyk, Iwona J Fijalkowska.   

Abstract

Most replicases are multi-subunit complexes. DNA polymerase epsilon from Saccharomyces cerevisiae is composed of four subunits: Pol2p, Dpb2p, Dpb3p, and Dpb4p. Pol2p and Dpb2p are essential. To investigate a possible role for the Dpb2p subunit in maintaining the fidelity of DNA replication, we isolated temperature-sensitive mutants in the DPB2 gene. Several of the newly isolated dpb2 alleles are strong mutators, exhibiting mutation rates equivalent to pol2 mutants defective in the 3' --> 5' proofreading exonuclease (pol2-4) or to mutants defective in mismatch repair (msh6). The dpb2 pol2-4 and dpb2 msh6 double mutants show a synergistic increase in mutation rate, indicating that the mutations arising in the dpb2 mutants are due to DNA replication errors normally corrected by mismatch repair. The dpb2 mutations decrease the affinity of Dpb2p for the Pol2p subunit as measured by two-hybrid analysis, providing a possible mechanistic explanation for the loss of high-fidelity synthesis. Our results show that DNA polymerase subunits other than those housing the DNA polymerase and 3' --> 5' exonuclease are essential in controlling the level of spontaneous mutagenesis and genetic stability in yeast cells.

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Year:  2008        PMID: 18245343      PMCID: PMC2248333          DOI: 10.1534/genetics.107.082818

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  78 in total

1.  Checkpoint-dependent activation of mutagenic repair in Saccharomyces cerevisiae pol3-01 mutants.

Authors:  A Datta; J L Schmeits; N S Amin; P J Lau; K Myung; R D Kolodner
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

Review 2.  Structural insights into the origins of DNA polymerase fidelity.

Authors:  William A Beard; Samuel H Wilson
Journal:  Structure       Date:  2003-05       Impact factor: 5.006

3.  The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro.

Authors:  P T Pham; M W Olson; C S McHenry; R M Schaaper
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

4.  In vivo protein interactions within the Escherichia coli DNA polymerase III core.

Authors:  P Jonczyk; A Nowicka; I J Fijałkowska; R M Schaaper; Z Cieśla
Journal:  J Bacteriol       Date:  1998-03       Impact factor: 3.490

Review 5.  Biochemistry and genetics of eukaryotic mismatch repair.

Authors:  R Kolodner
Journal:  Genes Dev       Date:  1996-06-15       Impact factor: 11.361

6.  Effect of accessory proteins on T4 DNA polymerase replication fidelity.

Authors:  L C Kroutil; M W Frey; B F Kaboord; T A Kunkel; S J Benkovic
Journal:  J Mol Biol       Date:  1998-04-24       Impact factor: 5.469

Review 7.  A mutator phenotype in cancer.

Authors:  L A Loeb
Journal:  Cancer Res       Date:  2001-04-15       Impact factor: 12.701

8.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

9.  Fidelity of DNA polymerase epsilon holoenzyme from budding yeast Saccharomyces cerevisiae.

Authors:  Kikuo Shimizu; Keiji Hashimoto; Jake M Kirchner; Wataru Nakai; Hiroko Nishikawa; Michael A Resnick; Akio Sugino
Journal:  J Biol Chem       Date:  2002-07-17       Impact factor: 5.157

10.  Cell cycle-dependent phosphorylation of the DNA polymerase epsilon subunit, Dpb2, by the Cdc28 cyclin-dependent protein kinase.

Authors:  Tapio Kesti; W Hayes McDonald; John R Yates; Curt Wittenberg
Journal:  J Biol Chem       Date:  2004-01-26       Impact factor: 5.157

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  19 in total

Review 1.  DNA polymerase epsilon: a polymerase of unusual size (and complexity).

Authors:  Zachary F Pursell; Thomas A Kunkel
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

2.  CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.

Authors:  Lance D Langston; Dan Zhang; Olga Yurieva; Roxana E Georgescu; Jeff Finkelstein; Nina Y Yao; Chiara Indiani; Mike E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

3.  Crystal structure of the human Polϵ B-subunit in complex with the C-terminal domain of the catalytic subunit.

Authors:  Andrey G Baranovskiy; Jianyou Gu; Nigar D Babayeva; Igor Kurinov; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2017-07-26       Impact factor: 5.157

Review 4.  Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools.

Authors:  Irina S-R Waisertreiger; Victoria G Liston; Miriam R Menezes; Hyun-Min Kim; Kirill S Lobachev; Elena I Stepchenkova; Tahir H Tahirov; Igor B Rogozin; Youri I Pavlov
Journal:  Environ Mol Mutagen       Date:  2012-10-10       Impact factor: 3.216

5.  Human Pol ε-dependent replication errors and the influence of mismatch repair on their correction.

Authors:  Anderson Ayuk Agbor; A Yasemin Göksenin; Kimberly G LeCompte; Samuel H Hans; Zachary F Pursell
Journal:  DNA Repair (Amst)       Date:  2013-09-17

6.  Human DNA polymerase ε is phosphorylated at serine-1940 after DNA damage and interacts with the iron-sulfur complex chaperones CIAO1 and MMS19.

Authors:  Tatiana N Moiseeva; Armin M Gamper; Brian L Hood; Thomas P Conrads; Christopher J Bakkenist
Journal:  DNA Repair (Amst)       Date:  2016-05-07

7.  Yeast DNA polymerase ϵ catalytic core and holoenzyme have comparable catalytic rates.

Authors:  Rais A Ganai; Pia Osterman; Erik Johansson
Journal:  J Biol Chem       Date:  2014-12-23       Impact factor: 5.157

8.  Mismatch repair-independent increase in spontaneous mutagenesis in yeast lacking non-essential subunits of DNA polymerase ε.

Authors:  Anna Aksenova; Kirill Volkov; Jaroslaw Maceluch; Zachary F Pursell; Igor B Rogozin; Thomas A Kunkel; Youri I Pavlov; Erik Johansson
Journal:  PLoS Genet       Date:  2010-11-18       Impact factor: 5.917

Review 9.  DNA polymerases at the eukaryotic fork-20 years later.

Authors:  Youri I Pavlov; Polina V Shcherbakova
Journal:  Mutat Res       Date:  2009-08-12       Impact factor: 2.433

10.  Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol epsilon and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors.

Authors:  Tahir H Tahirov; Kira S Makarova; Igor B Rogozin; Youri I Pavlov; Eugene V Koonin
Journal:  Biol Direct       Date:  2009-03-18       Impact factor: 4.540

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