Literature DB >> 18235430

ALEXA: a microarray design platform for alternative expression analysis.

Malachi Griffith, Michelle J Tang, Obi L Griffith, Ryan D Morin, Susanna Y Chan, Jennifer K Asano, Thomas Zeng, Stephane Flibotte, Adrian Ally, Agnes Baross, Martin Hirst, Steven J M Jones, Gregg B Morin, Isabella T Tai, Marco A Marra.   

Abstract

Mesh：

Year:  2008        PMID： 18235430     DOI： 10.1038/nmeth0208-118

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  9 in total

1.  Alternative expression analysis by RNA sequencing.

Authors:  Malachi Griffith; Obi L Griffith; Jill Mwenifumbo; Rodrigo Goya; A Sorana Morrissy; Ryan D Morin; Richard Corbett; Michelle J Tang; Ying-Chen Hou; Trevor J Pugh; Gordon Robertson; Suganthi Chittaranjan; Adrian Ally; Jennifer K Asano; Susanna Y Chan; Haiyan I Li; Helen McDonald; Kevin Teague; Yongjun Zhao; Thomas Zeng; Allen Delaney; Martin Hirst; Gregg B Morin; Steven J M Jones; Isabella T Tai; Marco A Marra
Journal:  Nat Methods       Date:  2010-09-12       Impact factor: 28.547

2.  Extensive relationship between antisense transcription and alternative splicing in the human genome.

Authors:  A Sorana Morrissy; Malachi Griffith; Marco A Marra
Journal:  Genome Res       Date:  2011-06-30       Impact factor: 9.043

3.  Single exon-resolution targeted chromosomal microarray analysis of known and candidate intellectual disability genes.

Authors:  Tracy Tucker; Farah R Zahir; Malachi Griffith; Allen Delaney; David Chai; Erica Tsang; Emmanuelle Lemyre; Sylvia Dobrzeniecka; Marco Marra; Patrice Eydoux; Sylvie Langlois; Fadi F Hamdan; Jacques L Michaud; Jan M Friedman
Journal:  Eur J Hum Genet       Date:  2013-11-20       Impact factor: 4.246

4.  Controlling oligonucleotide surface density in light-directed DNA array fabrication.

Authors:  Siyuan Chen; Margaret F Phillips; Franco Cerrina; Lloyd M Smith
Journal:  Langmuir       Date:  2009-06-02       Impact factor: 3.882

5.  Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization.

Authors:  Stephane Flibotte; Donald G Moerman
Journal:  BMC Genomics       Date:  2008-10-21       Impact factor: 3.969

6.  deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

Authors:  Andrew McPherson; Fereydoun Hormozdiari; Abdalnasser Zayed; Ryan Giuliany; Gavin Ha; Mark G F Sun; Malachi Griffith; Alireza Heravi Moussavi; Janine Senz; Nataliya Melnyk; Marina Pacheco; Marco A Marra; Martin Hirst; Torsten O Nielsen; S Cenk Sahinalp; David Huntsman; Sohrab P Shah
Journal:  PLoS Comput Biol       Date:  2011-05-19       Impact factor: 4.475

7.  An siRNA screen in pancreatic beta cells reveals a role for Gpr27 in insulin production.

Authors:  Gregory M Ku; Zachary Pappalardo; Chun Chieh Luo; Michael S German; Michael T McManus
Journal:  PLoS Genet       Date:  2012-01-12       Impact factor: 5.917

8.  Model-based probe set optimization for high-performance microarrays.

Authors:  Germán Gastón Leparc; Thomas Tüchler; Gerald Striedner; Karl Bayer; Peter Sykacek; Ivo L Hofacker; David P Kreil
Journal:  Nucleic Acids Res       Date:  2008-12-22       Impact factor: 16.971

9.  Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.

Authors:  John C Castle; Chaolin Zhang; Jyoti K Shah; Amit V Kulkarni; Auinash Kalsotra; Thomas A Cooper; Jason M Johnson
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330
  9 in total

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