Literature DB >> 18233044

Effects of spatial competition on the diversity of a quasispecies.

Jacobo Aguirre1, Susanna C Manrubia.   

Abstract

The diversity harbored by populations of RNA viruses results from high mutation rates, as well as from the characteristics of the environment where they evolve. By means of a simple model for structured quasispecies, we quantify how competition for space among phenotypic types shapes their distribution at the mutation-selection equilibrium. We introduce a general framework to treat this problem and relate mutation rate and competition strength to the quasispecies composition. For diffusion limited competition, diversity typically increases and the asymptotic growth rate of the population diminishes as diffusion decreases. Limited mobility confers a relative advantage to worse competitors. The stationary state is characterized by an over-production of viral particles. Empirical data allow an estimation of mutation rates compatible with the diversity observed in viral populations infecting cellular monolayers.

Mesh:

Year:  2008        PMID: 18233044     DOI: 10.1103/PhysRevLett.100.038106

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

Review 1.  Viral quasispecies evolution.

Authors:  Esteban Domingo; Julie Sheldon; Celia Perales
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

2.  Pathways to extinction: beyond the error threshold.

Authors:  Susanna C Manrubia; Esteban Domingo; Ester Lázaro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

3.  Severe hindrance of viral infection propagation in spatially extended hosts.

Authors:  José A Capitán; José A Cuesta; Susanna C Manrubia; Jacobo Aguirre
Journal:  PLoS One       Date:  2011-08-23       Impact factor: 3.240

4.  Quasispecies spatial models for RNA viruses with different replication modes and infection strategies.

Authors:  Josep Sardanyés; Santiago F Elena
Journal:  PLoS One       Date:  2011-09-19       Impact factor: 3.240

5.  Limited role of spatial self-structuring in emergent trade-offs during pathogen evolution.

Authors:  Víctor Buendía; Miguel A Muñoz; Susanna Manrubia
Journal:  Sci Rep       Date:  2018-08-20       Impact factor: 4.379

6.  Mutagenesis Scanning Uncovers Evolutionary Constraints on Tobacco Etch Potyvirus Membrane-Associated 6K2 Protein.

Authors:  Rubén González; Beilei Wu; Xianghua Li; Fernando Martínez; Santiago F Elena
Journal:  Genome Biol Evol       Date:  2019-04-01       Impact factor: 3.416

7.  Mosquito bottlenecks alter viral mutant swarm in a tissue and time-dependent manner with contraction and expansion of variant positions and diversity.

Authors:  Edward I Patterson; Kamil Khanipov; Mark M Rojas; Tiffany F Kautz; Dedeke Rockx-Brouwer; Georgiy Golovko; Levent Albayrak; Yuriy Fofanov; Naomi L Forrester
Journal:  Virus Evol       Date:  2018-02-15
  7 in total

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