Literature DB >> 18232823

Transmembrane helix tilting: insights from calculating the potential of mean force.

Jinhyuk Lee1, Wonpil Im.   

Abstract

To explore the microscopic forces governing the helix tilting in membranes, we have calculated the potential of mean force (PMF) as a function of tilt angle (tau) of WALP19, a transmembrane model peptide, in a dimyristoylphosphatidylcholine membrane. The PMF shows a wide range of thermally accessible tilt angles (5 degrees to 22 degrees ) with a minimum at tau=12.5 degrees . The free energy decomposition reveals that the helix tilting up to tau=12.5 degrees is mostly driven by the entropy contribution arising from the helix precession around the membrane normal, whereas the PMF increase after tau=12.5 degrees results from helical deformation due to the sequence-specific helix-lipid interactions.

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Year:  2008        PMID: 18232823     DOI: 10.1103/PhysRevLett.100.018103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  29 in total

1.  Orientation of fluorescent lipid analogue BODIPY-PC to probe lipid membrane properties: insights from molecular dynamics simulations.

Authors:  Kevin C Song; Philip W Livanec; Jeffery B Klauda; Krzysztof Kuczera; Robert C Dunn; Wonpil Im
Journal:  J Phys Chem B       Date:  2011-04-22       Impact factor: 2.991

2.  Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation.

Authors:  Taehoon Kim; Wonpil Im
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

3.  Transmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables.

Authors:  Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

4.  Solid-state NMR ensemble dynamics as a mediator between experiment and simulation.

Authors:  Taehoon Kim; Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

5.  Membrane insertion of a voltage sensor helix.

Authors:  Chze Ling Wee; Alan Chetwynd; Mark S P Sansom
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

6.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-03-05       Impact factor: 3.162

7.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

8.  Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation between Binary Bilayers.

Authors:  Soohyung Park; Min Sun Yeom; Olaf S Andersen; Richard W Pastor; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2019-10-14       Impact factor: 6.006

9.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

10.  Juxta-terminal Helix Unwinding as a Stabilizing Factor to Modulate the Dynamics of Transmembrane Helices.

Authors:  Armin Mortazavi; Venkatesan Rajagopalan; Kelsey A Sparks; Denise V Greathouse; Roger E Koeppe
Journal:  Chembiochem       Date:  2016-02-10       Impact factor: 3.164

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